BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0003.p (278 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Rv0673 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Mtu M... 139 9e-33 MT0702 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase MtC M... 139 9e-33 RSc2872 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Rso ... 126 6e-29 Rv1935c [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Mtu ... 124 3e-28 MT1985 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase MtC M... 124 3e-28 >Rv0673 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Mtu Mycobacterium tuberculosis H37Rv Length = 312 Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 27/285 (9%) Query: 14 RVRRITLNRPEKRNALNNRLRGEIFEVLEQADRDPGISISILRGAGPCFSAGYDLSA--- 70 R+ RIT NRPEK NA+ E+ ++E+AD DPG+ + ++ G G F AG+DLSA Sbjct: 23 RIARITFNRPEKGNAIIADTPLELSALVERADLDPGVHVILVSGRGEGFCAGFDLSAYAE 82 Query: 71 ----------------DNRVDQPYHSASGPG------QWSRHVVEGWFSIWDLAKPVIAQ 108 D + H + P Q V G+ S+ KP + + Sbjct: 83 GSSSTGGGGAYQGTVLDGKTQAVNHLPNQPWDPMIDYQMMSRFVRGFASLMHADKPTVVK 142 Query: 109 VHGYCLAGGTELATACDVVYVADDAQIGYPPVRLMSPPDMQYHPWLVGMRRAMELMLTGD 168 +HGYC+AGGT++A D V A DA+IGYPP R+ P +G +RA L+ TGD Sbjct: 143 IHGYCVAGGTDIALHADQVIAAADAKIGYPPTRVWGVPAAGLWAHRLGDQRAKRLLFTGD 202 Query: 169 AMSGREAADWGYATRSFPLAELEAKTLDFAERAAKVPIELQQLNKRSVHRAMEIMGARAA 228 ++G +AA+WG A + A+L+ +T R A +P+ + K +++ A+ G + Sbjct: 203 CITGAQAAEWGLAVEAPEPADLDERTERLVARIAALPVNQLIMVKLALNSALLQQGVATS 262 Query: 229 IRAGTEIQALAFTTEASKAYMAGFRRDGGSVKAQLDQRDTTFGDY 273 T A T A++A G + + +RD FGDY Sbjct: 263 RMVSTVFDGAARHTPEGHAFVADAVEHG--FRDAVRRRDEPFGDY 305 >MT0702 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase MtC Mycobacterium tuberculosis CDC1551 Length = 312 Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 27/285 (9%) Query: 14 RVRRITLNRPEKRNALNNRLRGEIFEVLEQADRDPGISISILRGAGPCFSAGYDLSA--- 70 R+ RIT NRPEK NA+ E+ ++E+AD DPG+ + ++ G G F AG+DLSA Sbjct: 23 RIARITFNRPEKGNAIIADTPLELSALVERADLDPGVHVILVSGRGEGFCAGFDLSAYAE 82 Query: 71 ----------------DNRVDQPYHSASGPG------QWSRHVVEGWFSIWDLAKPVIAQ 108 D + H + P Q V G+ S+ KP + + Sbjct: 83 GSSSTGGGGAYQGTVLDGKTQAVNHLPNQPWDPMIDYQMMSRFVRGFASLMHADKPTVVK 142 Query: 109 VHGYCLAGGTELATACDVVYVADDAQIGYPPVRLMSPPDMQYHPWLVGMRRAMELMLTGD 168 +HGYC+AGGT++A D V A DA+IGYPP R+ P +G +RA L+ TGD Sbjct: 143 IHGYCVAGGTDIALHADQVIAAADAKIGYPPTRVWGVPAAGLWAHRLGDQRAKRLLFTGD 202 Query: 169 AMSGREAADWGYATRSFPLAELEAKTLDFAERAAKVPIELQQLNKRSVHRAMEIMGARAA 228 ++G +AA+WG A + A+L+ +T R A +P+ + K +++ A+ G + Sbjct: 203 CITGAQAAEWGLAVEAPEPADLDERTERLVARIAALPVNQLIMVKLALNSALLQQGVATS 262 Query: 229 IRAGTEIQALAFTTEASKAYMAGFRRDGGSVKAQLDQRDTTFGDY 273 T A T A++A G + + +RD FGDY Sbjct: 263 RMVSTVFDGAARHTPEGHAFVADAVEHG--FRDAVRRRDEPFGDY 305 >RSc2872 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Rso Ralstonia solanacearum Length = 258 Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 124/255 (48%), Gaps = 11/255 (4%) Query: 1 MSYQHIIVDDPRPRVRRITLNRPEKRNALNNRLRGEIFEVLEQADRDPGISISILRGAGP 60 MSYQHI+V+ R RV +TLNRP+ NALN+ L E+ L D D GI I+ G+ Sbjct: 1 MSYQHILVE-TRGRVGLVTLNRPKALNALNDALMDELGAALLAFDADEGIGAMIITGSDK 59 Query: 61 CFSAGYDLSADNRVDQPYHSASGPGQWSRHVVEGWFSIWDLAKPVIAQVHGYCLAGGTEL 120 F+AG D+ A D + + + ++ W +I + KPVIA V GY L GG EL Sbjct: 60 AFAAGADIGA--MADYDFATV----YKNEYITRNWETIRRIRKPVIAAVAGYALGGGCEL 113 Query: 121 ATACDVVYVADDAQIGYPPVRLMSPP---DMQYHPWLVGMRRAMELMLTGDAMSGREAAD 177 A CD++ AD A+ G P ++L + P Q P V +AM+L LT M EA Sbjct: 114 AMMCDIILAADTARFGQPEIKLGTMPGAGGTQRLPRAVSKAKAMDLCLTARMMGADEAER 173 Query: 178 WGYATRSFPLAELEAKTLDFAERAAKVPIELQQLNKRSVHRAMEIMGARAAIRAGTEIQA 237 G +R P +L + L AE A + + K S++ A E + +R + Sbjct: 174 AGLVSRVIPADKLLDEALAAAETIAGFSLPTAMMIKESINAAYETTLSE-GVRLERRLFH 232 Query: 238 LAFTTEASKAYMAGF 252 F TE K M F Sbjct: 233 ATFATEDQKEGMHAF 247 >Rv1935c [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Mtu Mycobacterium tuberculosis H37Rv Length = 318 Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 19/244 (7%) Query: 14 RVRRITLNRPEKRNALNNRLRGEIFEVLEQADRDPGISISILRGAGPCFSAGYDLSADNR 73 R+ ITL+RP++RNA + E+ E A+ D + + ILR AGP FSAG+DL + + Sbjct: 36 RIAAITLDRPKQRNAQTRGMLVELGAAFELAEADDTVRVVILRAAGPAFSAGHDLGSADD 95 Query: 74 V-------DQ-PYHSASGP---GQWSRHVVEGWFSI-----W-DLAKPVIAQVHGYCLAG 116 + DQ P + +G G SR+ E + W +L K IAQVHG L+ Sbjct: 96 IRERSPGPDQHPSYRCNGATFGGVESRNRQEWHYYFENTKRWRNLRKITIAQVHGAVLSA 155 Query: 117 GTELATACDVVYVADDAQIGYPPVRLMSPPDMQY--HPWLVGMRRAMELMLTGDAMSGRE 174 G LA CD++ ++D + ++Y HPW G R+ EL+LTGD + E Sbjct: 156 GLMLAWCCDLIVASEDTVFADVVGTRLGMCGVEYFGHPWEFGPRKTKELLLTGDCIGADE 215 Query: 175 AADWGYATRSFPLAELEAKTLDFAERAAKVPIELQQLNKRSVHRAMEIMGARAAIRAGTE 234 A G ++ FP EL T++FA R AKVP L K SV++ ++ MG AA+ + Sbjct: 216 AHALGMVSKVFPADELATSTIEFARRIAKVPTMAALLIKESVNQTVDAMGFSAALDGCFK 275 Query: 235 IQAL 238 I L Sbjct: 276 IHQL 279 >MT1985 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase MtC Mycobacterium tuberculosis CDC1551 Length = 318 Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 19/244 (7%) Query: 14 RVRRITLNRPEKRNALNNRLRGEIFEVLEQADRDPGISISILRGAGPCFSAGYDLSADNR 73 R+ ITL+RP++RNA + E+ E A+ D + + ILR AGP FSAG+DL + + Sbjct: 36 RIAAITLDRPKQRNAQTRGMLVELGAAFELAEADDTVRVVILRAAGPAFSAGHDLGSADD 95 Query: 74 V-------DQ-PYHSASGP---GQWSRHVVEGWFSI-----W-DLAKPVIAQVHGYCLAG 116 + DQ P + +G G SR+ E + W +L K IAQVHG L+ Sbjct: 96 IRERSPGPDQHPSYRCNGATFGGVESRNRQEWHYYFENTKRWRNLRKITIAQVHGAVLSA 155 Query: 117 GTELATACDVVYVADDAQIGYPPVRLMSPPDMQY--HPWLVGMRRAMELMLTGDAMSGRE 174 G LA CD++ ++D + ++Y HPW G R+ EL+LTGD + E Sbjct: 156 GLMLAWCCDLIVASEDTVFADVVGTRLGMCGVEYFGHPWEFGPRKTKELLLTGDCIGADE 215 Query: 175 AADWGYATRSFPLAELEAKTLDFAERAAKVPIELQQLNKRSVHRAMEIMGARAAIRAGTE 234 A G ++ FP EL T++FA R AKVP L K SV++ ++ MG AA+ + Sbjct: 216 AHALGMVSKVFPADELATSTIEFARRIAKVPTMAALLIKESVNQTVDAMGFSAALDGCFK 275 Query: 235 IQAL 238 I L Sbjct: 276 IHQL 279