BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0008.p         (164 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases,...   253   9e-68
CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ...   244   8e-65
SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases...   239   2e-63
AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ...   236   2e-62
STM0442 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases,...   214   5e-56

>mlr6847 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Mlo Mesorhizobium loti
          Length = 665

 Score =  253 bits (647), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 141/161 (87%), Gaps = 8/161 (4%)

Query: 3   PD-LVKMIFGRLNLEALPIHEPILVGTFAVVAIGGLALFAIVTYFWLWTYLWREWFTTVD 61
           PD L K IFGRL  ++LP+HEPI+V TF  VA+GG+AL  +VTYF LWTYLWREWFT+VD
Sbjct: 2   PDTLTKFIFGRLTWDSLPLHEPIVVATFVAVALGGIALLGVVTYFKLWTYLWREWFTSVD 61

Query: 62  HKRIGIMYMILGIVMLLRGFADALMMRLQQAIAF-------GAHHYDQIFTAHGVIMIFF 114
           HK+IGIMYM+LG+VMLLRGF+DA+MMRLQQA+AF        +HHYDQIFTAHGVIMIFF
Sbjct: 62  HKKIGIMYMVLGLVMLLRGFSDAIMMRLQQAMAFNGSEGYLNSHHYDQIFTAHGVIMIFF 121

Query: 115 VAMPLVTGLMNYVVPLQIGARDVSFPFLNNFSFWMTVGGAV 155
           VAMP VTGLMN+VVPLQIGARDVSFPFLNNFSFWMTVGGA+
Sbjct: 122 VAMPFVTGLMNFVVPLQIGARDVSFPFLNNFSFWMTVGGAI 162


>CC1772 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Ccr Caulobacter vibrioides
          Length = 665

 Score =  244 bits (622), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 120/162 (74%), Positives = 140/162 (86%), Gaps = 7/162 (4%)

Query: 1   MNPDLVKMIFGRLNLEALPIHEPILVGTFAVVAIGGLALFAIVTYFWLWTYLWREWFTTV 60
           M+PDLV+ IFGRL  +A+P+H+PIL+ TFAVVA+GG+ + A++T + LW YLWREW T+V
Sbjct: 1   MSPDLVQFIFGRLTWDAIPLHDPILLVTFAVVALGGVTVLALLTRYKLWGYLWREWLTSV 60

Query: 61  DHKRIGIMYMILGIVMLLRGFADALMMRLQQAIAFG-------AHHYDQIFTAHGVIMIF 113
           DHK+IG+MY+IL ++MLLRGFADALMMR QQA+AFG         HYDQIFTAHGVIMIF
Sbjct: 61  DHKKIGVMYIILALIMLLRGFADALMMRAQQAMAFGDATGYLPPEHYDQIFTAHGVIMIF 120

Query: 114 FVAMPLVTGLMNYVVPLQIGARDVSFPFLNNFSFWMTVGGAV 155
           FVAMPLVTGLMN VVPLQIGARDVSFPFLNNFSFWMTVGGAV
Sbjct: 121 FVAMPLVTGLMNLVVPLQIGARDVSFPFLNNFSFWMTVGGAV 162


>SMb21488 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Sme Sinorhizobium meliloti
          Length = 669

 Score =  239 bits (610), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 136/161 (84%), Gaps = 7/161 (4%)

Query: 2   NPDLVKMIFGRLNLEALPIHEPILVGTFAVVAIGGLALFAIVTYFWLWTYLWREWFTTVD 61
           +PD +K+IFGRL L+A+P HEPILV TF  VA+GG+AL  ++TY+  W  LWR+W T+VD
Sbjct: 4   DPDFLKLIFGRLTLDAIPYHEPILVVTFLAVALGGIALIGLITYYRFWGTLWRDWLTSVD 63

Query: 62  HKRIGIMYMILGIVMLLRGFADALMMRLQQAIAFGA-------HHYDQIFTAHGVIMIFF 114
           HK+IGIMY+IL +VMLLRGF+DA+MMRLQQA+AFG        HHYDQ+FTAHGVIMIFF
Sbjct: 64  HKKIGIMYIILALVMLLRGFSDAIMMRLQQAMAFGGSEGYLPPHHYDQVFTAHGVIMIFF 123

Query: 115 VAMPLVTGLMNYVVPLQIGARDVSFPFLNNFSFWMTVGGAV 155
           +AMP VTGLMN+VVPLQIGARDVSFPFLNNFSFWMT  GA+
Sbjct: 124 MAMPFVTGLMNFVVPLQIGARDVSFPFLNNFSFWMTTAGAI 164


>AGc227 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 667

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/162 (69%), Positives = 134/162 (82%), Gaps = 7/162 (4%)

Query: 1   MNPDLVKMIFGRLNLEALPIHEPILVGTFAVVAIGGLALFAIVTYFWLWTYLWREWFTTV 60
           +N D    +FG+L  E++P+HEPILV TFA VA+GG+ +   +TYF LW YLW EWFT++
Sbjct: 3   VNSDQTSFLFGKLTWESIPLHEPILVATFAAVALGGIVVVGALTYFRLWGYLWNEWFTSI 62

Query: 61  DHKRIGIMYMILGIVMLLRGFADALMMRLQQAIAFGA-------HHYDQIFTAHGVIMIF 113
           DHK+IGIMY+IL +VMLLRGFADA+MMR+QQAIA G        HHYDQIFTAHGVIMIF
Sbjct: 63  DHKKIGIMYIILALVMLLRGFADAIMMRVQQAIASGGSEGYLPPHHYDQIFTAHGVIMIF 122

Query: 114 FVAMPLVTGLMNYVVPLQIGARDVSFPFLNNFSFWMTVGGAV 155
           F+AMP++TGLMN+VVPLQIGARDVSFPFLNNFSFWMT  GA+
Sbjct: 123 FMAMPMITGLMNFVVPLQIGARDVSFPFLNNFSFWMTTAGAI 164


>STM0442 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1
           Sty Salmonella typhimurium LT2
          Length = 663

 Score =  214 bits (546), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 126/159 (79%), Gaps = 7/159 (4%)

Query: 9   IFGRLNLEALPIHEPILVGTFAVVAIGGLALFAIVTYFWLWTYLWREWFTTVDHKRIGIM 68
           +FG+L+L+A+P HEPI++ T A + +GGLA+ A +TYF  WTYLW+EW T+VDHKR+GIM
Sbjct: 1   MFGKLSLDAVPFHEPIVMVTIAAIIVGGLAILAAITYFGKWTYLWKEWLTSVDHKRLGIM 60

Query: 69  YMILGIVMLLRGFADALMMRLQQAIAFGA-------HHYDQIFTAHGVIMIFFVAMPLVT 121
           Y+I+ IVMLLRGFADA+MMR QQA+A          HHYDQIFTAHGVIMIFFVAMP V 
Sbjct: 61  YIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVI 120

Query: 122 GLMNYVVPLQIGARDVSFPFLNNFSFWMTVGGAVXCGPS 160
           GLMN VVPLQIGARDV+FPFLNN SFW TV G +    S
Sbjct: 121 GLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNLS 159