BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0082.p         (238 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb21087 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alp...    82   1e-15
SMa0934 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alph...    82   1e-15
AGpA164 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alph...    70   3e-12

>SMb21087 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member Sme Sinorhizobium meliloti
          Length = 1539

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 45  RLDYDKGISGRLMEVGFGPYR-NRADAEPSTYVAIELDDGRRHQVWGVGVVTDVADSGAR 103
           R+D+  G++G L+E G   +R N  DA+ S Y  I  DDG   ++WGV +   + D+GA 
Sbjct: 788 RVDHAAGVTGELVEEGMAKFRPNDEDADESPYADIRTDDGTVQRLWGVSLPKALKDAGAA 847

Query: 104 PGDRISLRRDGVEPFIRAIKSIDAATGIAGIERRQMWRNVWSVTVGERRADRPAAXDVLA 163
            GD I+LR+DGVE     +  +D  TG    E RQ+ RNVWS +  E  A R    +  +
Sbjct: 848 EGDTITLRKDGVERVKVQVPIVDEQTGEKRFEERQVDRNVWSASQLETAAARRERIERES 907

Query: 164 AQSQLVVINKLVERALPNDENARQSIMAFAKERIAHHLENGRSFAR 209
            + QL    +LVER   +   A+ + + F  E  A +    R FAR
Sbjct: 908 HRPQL--FKQLVERL--SRSGAKTTTLDFEGE--AGYQAQARDFAR 947


>SMa0934 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member Sme Sinorhizobium meliloti
          Length = 1539

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 45  RLDYDKGISGRLMEVGFGPYR-NRADAEPSTYVAIELDDGRRHQVWGVGVVTDVADSGAR 103
           R+D+  G++G L++ G   +R N  DA+ S Y  I  DDG   ++WGV +   + D+G  
Sbjct: 788 RVDHAAGVTGELVKEGMAKFRPNDEDADESPYADIRTDDGTVQRLWGVSLPKALKDAGVA 847

Query: 104 PGDRISLRRDGVEPFIRAIKSIDAATGIAGIERRQMWRNVWSVTVGERRADRPAAXDVLA 163
            GD I+LR+DGVE     +  +DA TG    E RQ+ RNVWS +  E  A R    +  +
Sbjct: 848 EGDTITLRKDGVERVKVQVPIVDAQTGEKRFEERQVDRNVWSASQLETAAARQERIERES 907

Query: 164 AQSQLVVINKLVERALPNDENARQSIMAFAKERIAHHLENGRSFAR 209
            + QL    +LVER   +   A+ + + F  E  A +    R FAR
Sbjct: 908 HRPQL--FKQLVERL--SRSGAKTTTLDFEDE--AGYQAQARDFAR 947


>AGpA164 [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit -
           helicase superfamily I member Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 1609

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 1/102 (0%)

Query: 45  RLDYDKGISGRLMEVGFGPYRNR-ADAEPSTYVAIELDDGRRHQVWGVGVVTDVADSGAR 103
           R+D+  G++G L+  G   +R +  D + S Y  ++ DDG  H++WGV +   + + G  
Sbjct: 855 RVDHAAGVTGELVGTGNAKFRPQDEDTDKSPYADVKTDDGTVHRLWGVSLPKALEEGGVS 914

Query: 104 PGDRISLRRDGVEPFIRAIKSIDAATGIAGIERRQMWRNVWS 145
            GD ++LR+DGVE     +  ID  TG    E R + RNVW+
Sbjct: 915 EGDTVTLRKDGVERVTVTVSVIDEKTGEKRFEERTVDRNVWT 956