BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0070.p         (85 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA220 [U] COG3838 Type IV secretory pathway, VirB2 components ...    91   6e-19
SMa1319 [U] COG3838 Type IV secretory pathway, VirB2 components ...    91   6e-19

>AGpA220 [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
          Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 99

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 66/84 (78%)

Query: 1  MGAVLSIALVEPALAQTANIEGVLQNIVNMLTGNVARLLATLAVIIVGIAWMFGYLDLRK 60
          M   + + +VEPA AQ+A IE VLQNIV+MLTGN+A+LLA +AVI++ IAWMFGY+DLR+
Sbjct: 16 MAVAIIVTMVEPAFAQSAGIETVLQNIVDMLTGNIAKLLAVIAVIVICIAWMFGYMDLRR 75

Query: 61 AAYVVLGVAITFGASEVVSILTGG 84
          A + ++G+   FGA+E+V+ + G 
Sbjct: 76 AGFWIIGIGGIFGATELVNTIVGA 99


>SMa1319 [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
          Sme Sinorhizobium meliloti
          Length = 99

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 65/84 (77%)

Query: 1  MGAVLSIALVEPALAQTANIEGVLQNIVNMLTGNVARLLATLAVIIVGIAWMFGYLDLRK 60
          M   + + +VEPA AQ A IE VLQNIV+MLTGN+A+LLA +AVI++ IAWMFGY+DLR+
Sbjct: 16 MATAIMVTMVEPAFAQAAGIETVLQNIVDMLTGNIAKLLAVIAVIVICIAWMFGYMDLRR 75

Query: 61 AAYVVLGVAITFGASEVVSILTGG 84
          A + ++G+   FGA+E+V+ + G 
Sbjct: 76 AGFWIIGIGGIFGATELVNTIVGS 99