BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0002.p (1159 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC0826 [V] COG1002 Type II restriction enzyme, methylase subunit... 977 0.0 DRA0119.1 [V] COG1002 Type II restriction enzyme, methylase subu... 517 e-146 DR2267 [V] COG1002 Type II restriction enzyme, methylase subunit... 231 8e-60 NMA1791 [V] COG1002 Type II restriction enzyme, methylase subuni... 170 2e-41 DRA0119 [V] COG1002 Type II restriction enzyme, methylase subuni... 139 6e-32 >CC0826 [V] COG1002 Type II restriction enzyme, methylase subunits Ccr Caulobacter vibrioides Length = 985 Score = 977 bits (2526), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/1001 (51%), Positives = 651/1001 (65%), Gaps = 57/1001 (5%) Query: 134 ITPAAFIKKWKKASLTERQAAHEHFLDLCALFGHPTPTEDDPTGERFAFEKGATKVGGGR 193 +TPA F+KKW + L ERQA+ EHFLDLC + PTP EDDP GER+ FE+GA K GGG Sbjct: 1 MTPAQFVKKWSDSQLRERQASQEHFLDLCRMLEVPTPAEDDPLGERYCFERGAAKTGGGD 60 Query: 194 GFADVWKRDHFAWEYKRKNGNLDAALLQLIRYAPALESPPLQVVCDVERFRIHTAWTNTV 253 G+ADVW++ F WEYK K+ NLDAAL QL YA L++PP VV D+ER +HT WTNT+ Sbjct: 61 GWADVWRKGCFGWEYKGKHKNLDAALRQLQAYALDLQNPPYLVVSDMERIIVHTNWTNTI 120 Query: 254 PTTYEIELEDLAEPAKREILRNVFHAPEKLKPTKTRAAVTAEAADKFSTIASRLRGKGTA 313 E L+DL EP K +LR VF + LKP + +TA+ A +F + RL+ +G Sbjct: 121 SRKIEFTLDDLHEPEKLAMLRQVFDGSDSLKPKISPQELTAKVAQRFGDLGRRLQERGHH 180 Query: 314 D-EIAHFVNQLVFCFFAQSVKLLPDGLFPKLLQRSSQN--PDRAKNYLNKLFEAMESGGE 370 ++AHF+N++VFC FA+ KLLP+GLF +L RS Q P A + LF M +GG Sbjct: 181 PRDVAHFLNRVVFCMFAEDAKLLPEGLFTRL-TRSMQMRPPAEAAPQFDALFAMMRAGGM 239 Query: 371 FDLNDIAWFNGGLFDGRRALPLDASDIGLLV-AAGSLDWSLIDPTIFGTLFERFLDPDK- 428 F + + WFNGGLFD + ALPL+ +DI L+ A DWS +DP++FG +FE L + Sbjct: 240 FGADIVHWFNGGLFDEKPALPLERADIKLIHDTAAEHDWSDLDPSVFGNMFEEALKATRE 299 Query: 429 RAQIGAHYTDQDKIAKIIDPVILRPLRAEWELAKQEIT------------------AFLH 470 RA +GAHYTD++KI KIIDPVI PL A+WE A EI A Sbjct: 300 RAALGAHYTDREKILKIIDPVITWPLMAQWETALAEIRAALDARAAAEAERKAVLEAAAE 359 Query: 471 GERTPPMRKRP---QRRMTKQEAAEETRSR----------YLERLRNLRILDPACGSGNF 517 R P++ + RR T A+ + + +L RL R+LDPACGSGNF Sbjct: 360 AMRADPVKAKAGEAARRKTLTAIAKRSDAALGQAKDRLEAFLSRLAAFRVLDPACGSGNF 419 Query: 518 LYLALQGVKDLENKANLECEILGLEPRLPVVGPEIVRGIEINPLAAELARTTIWIGDIQW 577 LY+AL +KD+E +A ++ E LGLE P VG VRGIEI AAELAR T+WIGD+QW Sbjct: 420 LYVALHALKDIERRALVDAERLGLEVPTPRVGLACVRGIEIEEYAAELARVTLWIGDLQW 479 Query: 578 RLRNGIHAKPKPILRKLDAIEGRDALVAATSTLLSHGKRGGAKDRSDAQYVEADWPEAEF 637 +N +PIL LD IE RDAL+ A T EA WP + Sbjct: 480 HAKNNYRGFAEPILSSLDQIECRDALLNADGT-------------------EAQWPAVDV 520 Query: 638 IVGNPPFLGVRLMRQALGDDTVQRLFEVYDGRVSREADLVCYWFEKARRALLSGQTSRVG 697 IVGNPPFLG + +R LG+D V+RLF Y G+V EAD V YW KA + + Q R G Sbjct: 521 IVGNPPFLGSKRLRDGLGNDYVERLFSTYRGKVPAEADFVAYWIAKAWELVQAQQGRRAG 580 Query: 698 LVATNSIRGGANRKVLEQIGADARVFEAWSDEPWVVDGAAVRVSLVCFGKGDDALRLDGE 757 LV TNS+RGGA+RKVL+ I + EAW+DEPW ++GAAVRVS+ FG G RL+G Sbjct: 581 LVTTNSVRGGASRKVLDPIADAGALMEAWADEPWALEGAAVRVSMFGFGDGFAERRLEGR 640 Query: 758 PVASINPDL-SSTIDLTKARRLADNAGVAFMGDTKGGAFDVPGELARKWLKLPLNANGRP 816 ++ D ++ D+TKA RL +NA +AFMGDTKGGAFDV GE+AR+WL+LPLN NGRP Sbjct: 641 KAEHLHSDFRGASTDVTKALRLKENASIAFMGDTKGGAFDVSGEIAREWLRLPLNPNGRP 700 Query: 817 NSDVLRPWRNGMDMTRRSRDMWIIDFGWEMSEREASLYEAPFQYVKEYVLPERSKNRRDA 876 NSDVL+PWRN MDMTRRS D WIIDFGW MSE +A+L+E PF++V +V PER +N R+ Sbjct: 701 NSDVLKPWRNAMDMTRRSSDKWIIDFGWTMSEADAALFETPFRHVLLHVKPERDRNNREM 760 Query: 877 YRERWWRHVEPRPGMWNALKGKDRVIVTPEVSRHRVFTWLSTQVVPDHKLQVIARDDDTT 936 YR WW+HVEPR G+ + R++VTPEVS+HR+F WL +V+PDHKLQV+ DDD + Sbjct: 761 YRLNWWKHVEPRQGLMKRVPALSRLLVTPEVSKHRLFIWLDARVLPDHKLQVVTLDDDCS 820 Query: 937 LGILLSKWHLMWSLGVGSWHGVGNDPRYTISSSFETFPFPTGLTPNLPAARFAREGRATA 996 G+L S++H +W+L GSWHG GNDPRYTIS++FETFPFP GLTPN+ A + + RA A Sbjct: 821 FGVLHSRFHEVWALAAGSWHGSGNDPRYTISTTFETFPFPEGLTPNIAAVDYEGDPRAQA 880 Query: 997 ISKAARRLEELRQAWLNPAGLVRAEAEVVPGYPMRVVASDAAAEKLLRERTLTDLYNQRP 1056 I+ AA L LR+AWLNP LVR E EVVPGYP RV+ A L++RTLT+LYNQRP Sbjct: 881 IAAAAAELNRLREAWLNPPDLVRIEPEVVPGYPDRVLPVSPEAGAELKKRTLTNLYNQRP 940 Query: 1057 HWLIEVHRALDSAVAAAYGWPSDISDEDALANLLALNLSRG 1097 WL H+ LD+AVAAAYGWP ++D++ L L ALN R Sbjct: 941 AWLDMAHQRLDAAVAAAYGWPDGLTDDEILERLFALNQERA 981 >DRA0119.1 [V] COG1002 Type II restriction enzyme, methylase subunits Dra Deinococcus radiodurans Length = 671 Score = 517 bits (1332), Expect = e-146, Method: Compositional matrix adjust. Identities = 318/747 (42%), Positives = 420/747 (56%), Gaps = 94/747 (12%) Query: 365 MESGGEFDLNDIAWFNGGLFDGRRALPLDASDIGLLVAAGSLDWSLIDPTIFGTLFERFL 424 M+ GGEF DI FNGGLFD AL L + D L+ A LDWS ++P+IFGTLFE L Sbjct: 1 MKGGGEFWGTDIRHFNGGLFDSEDALALTSEDAAALIIAAKLDWSEVEPSIFGTLFENSL 60 Query: 425 DPDKRAQIGAHYTDQDKIAKIIDPVILRPLRAEWELAKQEITAFLHGERTPPMRKRPQRR 484 D D R++ GAHYT + I +I+D V++ PL AEW+ + + P ++K R Sbjct: 61 DVDTRSRRGAHYTSVNDIERIVDRVVMEPLWAEWDALRLSL---------PELKK--NVR 109 Query: 485 MTKQEAAEETRSRYLERLRNLRILDPACGSGNFLYLALQGVKDLENKANLECEI--LGLE 542 + + A + +RL +RILDPACGSGNFL++AL+ + DLE + + + +G Sbjct: 110 LERLFA-------FQDRLTAVRILDPACGSGNFLFVALKKLLDLEYQVRMAAVMNDIGEF 162 Query: 543 PRLPVVGPEIVRGIEINPLAAELARTTIWIGDIQWRLRNGIHAKPKPILRKLDAIEGRDA 602 P+V P+ + GIEI A ELA T+W+G QW+ +G H + PIL++LD I+ RDA Sbjct: 163 EMPPLVHPQQMLGIEIETFAHELASITLWMGYFQWKRAHGGHWE-TPILQRLDNIQNRDA 221 Query: 603 LVAATSTLLSHGKRGGAKDRSDAQYVEADWPEAEFIVGNPPFLGVRLMRQALGDDTVQRL 662 L+ T EA WP A+FIVGNPPFLG ++MR LG+ +L Sbjct: 222 LLNPDGT-------------------EATWPRADFIVGNPPFLGDKMMRSQLGEAYTTQL 262 Query: 663 FEVYDGRVSREADLVCYWFEKARRALLSGQTSRVGLVATNSIRGGANRKVLEQIGADARV 722 E + R+ ++DLVCYW EKAR + +G T+R G V TNSIRGG NR VLE+I A + Sbjct: 263 RETFKDRLPGQSDLVCYWPEKARALIEAGVTTRAGFVTTNSIRGGKNRVVLERIKATGDL 322 Query: 723 FEAWSDEPWVVDGAAVRVSLVCFGKGDDALR-LDGEPVASINPDLSSTIDLTKARRLADN 781 F AW DEPW +GAAVRVSL F G + LR L+ V IN DL++ D+ +A++L +N Sbjct: 323 FMAWPDEPWQQNGAAVRVSLFGFDNGTETLRTLNDGHVGVINADLNAGTDVKQAQKLPEN 382 Query: 782 AGVAFMGDTKGGAFDVPGELARKWLKLPLNANGRPNSDVLRPWRNGMDMTRRSRDMWIID 841 AGV+F+G KGGAFD+PG+LAR WL +P N + N+DVL+PW NGMD+TRR WIID Sbjct: 383 AGVSFIGTQKGGAFDIPGDLARSWLSVP-NPDRVSNADVLKPWVNGMDLTRRPSGRWIID 441 Query: 842 FGWEMSEREASLYEAPFQYVKEYVLPERSKNRRDAYRERWWRHVEPRPGMWNALKGKDRV 901 F +M E EA Y P YV++ + PER+ N RERWW H RP + A DR Sbjct: 442 FA-QMDEGEARQYLQPMAYVEQKIRPERATNSDRPSRERWWLHQRSRPELREATIELDRF 500 Query: 902 IVTPEVSRHRVFTWLSTQVVPDHKLQVIARDDDTTLGILLSKWHLMWSLGVGSWHGVGND 961 I P V++H + WL +PD ++ VIARDDD G+L S H W+ G++ GVGND Sbjct: 501 IGIPRVAKHLLPVWLPEGTLPDSQVVVIARDDDFIFGVLASTIHRSWARMQGTYMGVGND 560 Query: 962 PRYTISSSFETFPFPTGLTPNLPAARFAREGRATAISKAARRLEELRQAWLNPAGLVRAE 1021 RYT S+ FETFP P E RA I K A+ + +LR+ LN Sbjct: 561 LRYTPSTCFETFPVPAP----------TDEQRA-EIEKWAKYIVQLREHLLN-------- 601 Query: 1022 AEVVPGYPMRVVASDAAAEKLLRERTLTDLYNQRPHW------------LIEVHRALDSA 1069 DA TLT +YNQ L H LD A Sbjct: 602 -------------QDAKG-------TLTGIYNQLEKLRNSPDAAHPVSALATAHDKLDQA 641 Query: 1070 VAAAYGWPSDISDEDALANLLALNLSR 1096 VA AYGW ++++ L LLALNL R Sbjct: 642 VATAYGWEWPLNEDQVLERLLALNLER 668 >DR2267 [V] COG1002 Type II restriction enzyme, methylase subunits Dra Deinococcus radiodurans Length = 840 Score = 231 bits (589), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 246/909 (27%), Positives = 382/909 (42%), Gaps = 152/909 (16%) Query: 139 FIKKWKKASLTERQAAHEHFLD-LCALFGHPTPTEDDPTGERFAFEKGATKVGGGRGFAD 197 F+ W+ E+ + FLD L FGH E E K GGG+ FAD Sbjct: 13 FVAYWRTLKGDEK-GESQVFLDRLFQAFGHAGYKEAGAE-----LEYRVAKQGGGKKFAD 66 Query: 198 VWKRDHFAWEYKRKNGNLDAALLQLIRYAPAL--ESPPLQVVCDVERFRIHTAWTNTVPT 255 + R E K++ L Q Y L + P V+C+ + ++ Sbjct: 67 LLWRPRVLIEMKKRGEKLANHYQQAFDYWLKLVPDRPRYAVLCNFDELWVYDFNQQLDEP 126 Query: 256 TYEIELEDLAEPAKREILRNVFHAPEKLKPTKTRAAVTAEAADKFSTIASRLRGKGTADE 315 + +E+L P + +L +F R VT EAAD + + + + +G Sbjct: 127 MDRLRIEEL--PERYTVLNFMFEQERAPLFGNNRVDVTREAADSVAKVLNSVIARGEDRA 184 Query: 316 IAH-FVNQLVFCFFAQSVKLLPDGLFPKLLQRSSQNPDRAKNYLNKLFEAMES-----GG 369 A F+ Q V FA+ +L+P G F +L + + + LF M + GG Sbjct: 185 RAQRFLLQCVMAMFAEDFELIPRGFFTELADDARAGRGSSFDLFGGLFRQMNTSERARGG 244 Query: 370 EFDLNDIAWFNGGLFDGRRALPLDASDIGLL-VAAGSLDWSLIDPTIFGTLFERFLDPDK 428 F I +FNGGLF + L+ ++ LL AA +W+ I P IFG LF+ +D + Sbjct: 245 RF--APIPYFNGGLFRAVDPIELNRDELYLLHKAALENNWARIQPQIFGVLFQSSMDKKE 302 Query: 429 RAQIGAHYTDQDKIAKIIDPVILRPLRAEWELAKQEITAFLHGERTPPMRKRPQRRMTKQ 488 + GAHYT + I +++ P I+ P QR++ Sbjct: 303 QHAKGAHYTSEADIMRVVLPTIVTPF---------------------------QRQIEAA 335 Query: 489 EAAEETRSRYLERLRNLRILDPACGSGNFLYLALQGVKDLENKANLECEILGLE-PRLPV 547 +E R+ L+ L + ++LDPACGSGNFLY+A + ++ LE +A L L LP Sbjct: 336 TTQKELRA-ILDELASFQVLDPACGSGNFLYVAYRELRRLEARALLRLRDLSAPGTALPP 394 Query: 548 VGPEI--VRGIEINPLAAELARTTIWIGDIQWRLRNGIHAKPKPILRKLDAIEGRDALVA 605 I + G+E +P ELA+ T+ + + +R++ + G L Sbjct: 395 ARVSIRQMHGLEYDPFGVELAKVTLTLAK-------------ELAIREMHDLLGNTGLDF 441 Query: 606 ATSTLLSHGKRGGAKDRSDAQYVEAD-----WPEAEFIVGNPPFLGVRLMRQALGDDTVQ 660 L D D + V+ D WP + IVGNPPF +++ +G V+ Sbjct: 442 DQPLPL---------DNLDDRIVQGDALFTPWPRVDAIVGNPPFQSKNKLQREMGAAYVK 492 Query: 661 RLFEVYDGRVSREADLVCYWFEKARRALLSGQTSRVGLVATNSIRGGANR-----KVLEQ 715 +L Y V AD YW KA L SGQ R GLV TN+IR +R V++ Sbjct: 493 KLRAHYPD-VPGRADYCVYWIRKAHDQLGSGQ--RAGLVGTNTIRQNDSRVGGLDYVVQH 549 Query: 716 IG--ADARVFEAWSDEPWVVDGAAVRVSLVCFGKG--DDALRL------------DGEPV 759 G DA + WS + AAV VS+V + KG + L + Sbjct: 550 GGTITDAVGTQVWSGD------AAVHVSIVNWVKGPAEGPKHLAWQVGDHRTSPWQSTEL 603 Query: 760 ASINPDLSSTIDLTKAR--RLADNAGVAFMGDTKG-GAFDVPGELARKWLKLPLNANGRP 816 IN LS+ D+T+A+ R+ N+G + G T G F + G A + L + R Sbjct: 604 PVINSALSAGTDVTQAQKLRVNMNSGACYQGQTHGHKGFLLDGLEAGQML-----SAERK 658 Query: 817 NSDVLRPWRNGMDMTRRS---RDMWIIDFGWEMSERE---ASLYEAPFQYVKEYVLPER- 869 N++V+ P+ G ++ R S ++IDF R+ A Y+ PF ++ VLP R Sbjct: 659 NAEVIFPYLTGDELLRTSPPHPTRYVIDF----QPRDVFGARAYKLPFARIEREVLPTRQ 714 Query: 870 ----------------------SKNRRDAYRERWWRHVEPRPGMWNALKGKDRVIVTPEV 907 +K+ R+ + +WW R M + R IV V Sbjct: 715 AAAAEEEARNAEVLAANPKAKTNKHHRN-FLNQWWALSYGRSEMIEKISSLSRYIVCSRV 773 Query: 908 SRHRVFTWLSTQVVPDHKLQVIARDDDTTLGILLSKWHLMWSLGVGSWHGVGNDPRYTIS 967 ++ +VF +L + P LQ+ A +DD + G++ S H W + G + YT Sbjct: 774 TKRQVFEFLDNGIRPSDGLQIFAFEDDYSFGVIQSSVHWQWLIARGG--TLTARLMYTSD 831 Query: 968 SSFETFPFP 976 + F+TFP+P Sbjct: 832 TVFDTFPWP 840 >NMA1791 [V] COG1002 Type II restriction enzyme, methylase subunits NmA Neisseria meningitidis Z2491 Length = 803 Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 220/881 (24%), Positives = 343/881 (38%), Gaps = 154/881 (17%) Query: 261 LEDLAEPAKREILRNVFHAPEKLKPTKTRAAVTAEAADKFSTIASRLRGKGTADEIAHFV 320 +E+L E R + +F K++ + A + A A A + G E+ F+ Sbjct: 1 MEELPEYITRGVFDFMFGIEAKVRQIQEEANIQAAATIGRLHDALKEEGIYEEHELRLFI 60 Query: 321 NQLVFCFFAQ-SVKLLPDGLFPKLLQRSSQNPDRAKNYLNKLFEAMESGGEF-------D 372 +L+F FFA S + LF L+ + + D + LN+LFE + + + Sbjct: 61 TRLLFLFFADDSAVFRRNYLFQDFLE-NCKEADTLGDKLNQLFEFLNTPDQKRSKTQSEK 119 Query: 373 LNDIAWFNGGLFDGR-RALPLDASDIGLLVAAGSLDWSLIDPTIFGTLFERFLDPDKRAQ 431 + NGGLF R R A L+ G+ DW I P IFGTLF+ +D +R + Sbjct: 120 FKGFEYVNGGLFKERLRTFDFTAKQHRALIDCGNFDWRNISPEIFGTLFQSVMDAQERRE 179 Query: 432 IGAHYTDQDKIAKIIDPVILRPLRAEWELAKQEITAFLHGERTPPMRKRPQRRMTKQEAA 491 GAHYT+ I K+I+ + L LRAE+E K +R K+ AA Sbjct: 180 AGAHYTEAANIDKVINGLFLENLRAEFEAVKA-----------------LKRDKAKKLAA 222 Query: 492 EETRSRYLERLRNLRILDPACGSGNFLYLALQGVKDLENKANLECEILGLEPRLPVVGPE 551 + ++++NL+ LDPACG GNFL +A ++ LE+ ++ E L + P Sbjct: 223 ------FYQKIQNLQFLDPACGCGNFLIVAYDRIRALED--DIIAEALKDKADGLFDSPS 274 Query: 552 I------VRGIEINPLAAELARTTIWIGDIQWRLRNGIHAKPKPILRKLDAIEGRDALVA 605 + GIEI+ A +ART +W+ + Q +R I D VA Sbjct: 275 VQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRF---------------DGEVA 319 Query: 606 ATSTLLSHGKRGGAKDRSDAQYVEADWPEAEFIVGNPPFLGVRLMRQALGDDTVQRLFEV 665 + L A + A + W A++I GNPPF+G + +D E Sbjct: 320 CHTLPLE-----DAAEIIHANSLRTPWQAADYIFGNPPFIGSTYQTKEQKND-----LES 369 Query: 666 YDGRVSREA--DLVCYWFEKARRALLSGQTSRVGLVATNSIRGGANRKVL--------EQ 715 G + D VC W+ KA + + V+TNSI G ++L + Sbjct: 370 ICGHIKGYGLLDYVCNWYVKAAGIMAQHPQVQTAFVSTNSICQGQQVEILWGSLLNQGIE 429 Query: 716 IGADARVFEAWSDEPWVVDGAAVRVSLVCFGKGD---------DALRLDGEP----VASI 762 I R F+ W+ + AAV +V F + D + GEP VA+I Sbjct: 430 IHFAHRTFQ-WTSQ--AAGKAAVHCIIVGFRQKPPMPSEKTLYDYPDIKGEPEKHAVANI 486 Query: 763 NPDLSSTIDLTKARR--------------LADNAGVAFMGDTKGGAFDVPGELARKWLKL 808 NP L DL A+R G + + A LA ++++ Sbjct: 487 NPYLIDAPDLIIAKRSRPIHCEPDMVNGSKPTEGGNLILSTAEKDALIAAEPLAEQYIRP 546 Query: 809 PLNANGRPNSDVL-RPWRNGMDMTRRSRDMWIIDFGWEMSEREASLYEAPFQYVKEYVLP 867 + A+ N W +G+ +R+ D+ ++ +A Q VK Sbjct: 547 FIGADEFLNGKTRWCLWFHGVSDVKRNHDL-----------KQMPQVQARIQAVKTMREA 595 Query: 868 ERSKNRRDAYRERWWRHVEPRPGMWNALKGKDRVI--VTPEVSRHRVFTWLSTQVVPDHK 925 K + W +P N L +I V+ E R +LS + V + Sbjct: 596 SSDKQTQKDAATPWLFQKIRQPSDGNYL-----IIPSVSSESRRFIPIGYLSFETVVSNL 650 Query: 926 LQVIARDDDTTLGILLSKWHLMWSLGVGSWHGVGNDPRYTISSSFETFPFPTGLTPNLPA 985 ++ GIL S H + V + +D RY+ + + FPFP LP+ Sbjct: 651 AFILPNATLYHFGILSSTMHNAFMRTVAG--RLKSDYRYSNTVVYNNFPFPESC--RLPS 706 Query: 986 ARFAREGRATAISKAARRLEELRQAWLNPAGLVRAEAEVVPGYPMRVVASDAAAEKLLRE 1045 + A+ AA Q L+ G R EA+ E L E Sbjct: 707 ENDRPDPLRAAVEAAA-------QTVLDARGQYRREAQ----------------EAGLPE 743 Query: 1046 RTLTDLYNQRPHW--LIEVHRALDSAVAAAYGWPSDISDED 1084 TL +LY + L + H LD AV AYG+ + + +D Sbjct: 744 PTLAELYAPDAGYTALDKAHATLDKAVDKAYGYKTGKNTDD 784 >DRA0119 [V] COG1002 Type II restriction enzyme, methylase subunits Dra Deinococcus radiodurans Length = 238 Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 125/235 (53%), Gaps = 17/235 (7%) Query: 134 ITPAAFIKKWKKASL--TERQAAHEHFLDLCALFGHPTPTEDDPTGERFAFEKGATKVGG 191 + P F W + +L TER + +H+LDLC L H P D + FE+ TKVG Sbjct: 1 MHPQEFADTWSRRALKATERDSYVQHWLDLCQLLHHEAPGADPD----YKFERRVTKVGT 56 Query: 192 -GRGFADVWKRDHFAWEYKRKNGNLDAALLQLIRYAPALESPPLQVVCDVERFRIHTAWT 250 +GFADV+K+ HF EYKR +L AAL Q Y+ L +PPL + D +R I+TA+T Sbjct: 57 KDKGFADVFKKAHFITEYKRPGSDLGAALQQATLYSRDLGNPPLLLTSDFQRIEINTAFT 116 Query: 251 NTVPTTYEIELEDLAE---------PAKREILRNVFHAPEKLKPTKTRAAVTAEAADKFS 301 T P +Y I L+D+AE PA +IL + H P L P R +T +A + Sbjct: 117 GTSPKSYLITLDDIAENRVVGGNDVPAL-QILHSALHQPYDLDPRLFRERITTDATRQVG 175 Query: 302 TIASRLRGKGTADEIAHFVNQLVFCFFAQSVKLLPDGLFPKLLQRSSQNPDRAKN 356 +A RL + AH + ++VF FA+ +L G+ +LL+R+ +P++ + Sbjct: 176 LVARRLGEREGRTRAAHMMMRVVFALFAEDTGMLERGIVTRLLERARLHPEKTSS 230