BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0079.0002.p         (59 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMa1216 [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c s...    68   4e-12
SMa0766 [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c s...    66   2e-11
BMEI1565 [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c ...    58   4e-09

>SMa1216 [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit Sme
           Sinorhizobium meliloti
          Length = 243

 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSPGS 55
           VMP Y  L +T L+  +VA  L  NRAVGVPYTDE I NA ADLKAQ DP++ GS
Sbjct: 139 VMPSYAFLKETPLEVKNVAMSLEANRAVGVPYTDEMIGNAAADLKAQADPNADGS 193


>SMa0766 [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit Sme
           Sinorhizobium meliloti
          Length = 243

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 39/55 (70%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSPGS 55
           VMP Y  L  T L+ +++A +L  NRAVGVPYTDE I NA ADLKAQ DPD+  S
Sbjct: 139 VMPSYAFLKDTPLEVTNIAMNLEANRAVGVPYTDEMIDNATADLKAQADPDADAS 193


>BMEI1565 [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit Bme
           Brucella melitensis
          Length = 243

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 35/55 (63%)

Query: 1   VMPGYPSLAKTELDPSDVAAHLRTNRAVGVPYTDEQIANAVADLKAQVDPDSPGS 55
           VMP Y  L +  L   D+AAHL+ N AVGVPYT E I  A+ DLKAQ  PD+  S
Sbjct: 139 VMPSYAFLKERPLKADDIAAHLKANVAVGVPYTQEMIDKALDDLKAQATPDADTS 193