BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0077.0008.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1403 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...   255   4e-68
mlr5690 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...   253   1e-67
RSc0820 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...    59   5e-09

>PA1403 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 210

 Score =  255 bits (651), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/176 (72%), Positives = 148/176 (84%), Gaps = 3/176 (1%)

Query: 1   LTKEGAQRFTTARVAEKAGVSVGSLYQYFPNKASILFRLQSDEWRQTTRLLRGILEDATR 60
           L  EGAQRFTTARVAE+AGVS+GSLYQYFPNKA+ILFRLQSDEWR+TTRLL  ILED TR
Sbjct: 35  LASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTR 94

Query: 61  PPLDRLRSLVYAFIRSECEEAAVRVALSDAAPLCRDAPEAR---ASGERIAEAFMREALP 117
           PPL+RLR LV AF+RSECEEAA+RVALSDAAPL RDA EAR   A G R+ +AF+REALP
Sbjct: 95  PPLERLRRLVLAFVRSECEEAAIRVALSDAAPLYRDADEAREVKAEGARVFQAFLREALP 154

Query: 118 KTSDAVRATAGDLITTTLSTVGKDFSESPRAPAEIATYADAMADMFGAYLKSLGKR 173
           + ++A R+ AGDL+TTTL  VGK FSE PR+ AEI  YA+A+ADM  AYL +LG+R
Sbjct: 155 EVAEAERSLAGDLLTTTLGAVGKQFSEQPRSEAEIERYAEALADMLCAYLAALGER 210


>mlr5690 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 211

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 143/176 (81%), Gaps = 3/176 (1%)

Query: 1   LTKEGAQRFTTARVAEKAGVSVGSLYQYFPNKASILFRLQSDEWRQTTRLLRGILEDATR 60
           L  EGAQRFTT RVAEKAGVSVGSLYQYFPNKA++LFRLQSDEW+QTT LL  IL++  +
Sbjct: 35  LETEGAQRFTTTRVAEKAGVSVGSLYQYFPNKAALLFRLQSDEWQQTTDLLCRILQEVEK 94

Query: 61  PPLDRLRSLVYAFIRSECEEAAVRVALSDAAPLCRDAP---EARASGERIAEAFMREALP 117
           PPL+RLR LV+AF+RSECEEAAVR AL DAAPL RDAP   EARAS ER  E FMRE LP
Sbjct: 95  PPLERLRILVHAFVRSECEEAAVRGALDDAAPLYRDAPEAQEARASAERTVEIFMRETLP 154

Query: 118 KTSDAVRATAGDLITTTLSTVGKDFSESPRAPAEIATYADAMADMFGAYLKSLGKR 173
           +  DA RA AG+L+ T LS  G+DFS SPR PAEI TY+DA+ADMF AYL+SLG R
Sbjct: 155 QAEDATRALAGELVMTMLSAAGRDFSASPRIPAEIETYSDAIADMFCAYLRSLGHR 210


>RSc0820 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 225

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 65/131 (49%), Gaps = 8/131 (6%)

Query: 1   LTKEGAQRFTTARVAEKAGVSVGSLYQYFPNKASILFRLQSDEWRQTTRLLRGILEDAT- 59
           L K G +R TT  +AE+AGV++GSLYQYFPNK +I+  LQ     QT  +L   L   + 
Sbjct: 34  LVKFGWERLTTNAIAERAGVNIGSLYQYFPNKQAIIAELQRRHVLQTREILSKALPQVSE 93

Query: 60  -RPPLDRLRSLVYAFIRSECEEAAVRVALSDAAPLCRDAP---EARASGE--RIAEAFMR 113
            R   + L  LV A I       AV  A+    P     P   E+R   +  ++ + FM+
Sbjct: 94  QRSLREALTLLVVAMIDEHRVAPAVHRAIDAELPRSVRVPLGDESRGGDQPLQVLQPFMK 153

Query: 114 EALPKTSDAVR 124
             +P    A+R
Sbjct: 154 N-VPDPHFALR 163