BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0076.0017.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEI0270 [H] COG0142 Geranylgeranyl pyrophosphate synthase Bme B... 202 3e-52 CC2069 [H] COG0142 Geranylgeranyl pyrophosphate synthase Ccr Cau... 171 7e-43 AGc4933 [H] COG0142 Geranylgeranyl pyrophosphate synthase Atu Ag... 155 5e-38 SMc03884 [H] COG0142 Geranylgeranyl pyrophosphate synthase Sme S... 148 7e-36 slr0739 [H] COG0142 Geranylgeranyl pyrophosphate synthase Syn Sy... 148 8e-36 >BMEI0270 [H] COG0142 Geranylgeranyl pyrophosphate synthase Bme Brucella melitensis Length = 304 Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 109/203 (53%), Positives = 144/203 (70%), Gaps = 2/203 (0%) Query: 6 LRRGRPTLHKAYDDATAILAGDALLTIAFDIITRDAIHKDAQVRLLLTRALARASGIGGM 65 LRRG+PT+HKA+D+A AILAGD+LLT AFDII D DA R+ L AL RASG+GGM Sbjct: 104 LRRGQPTVHKAFDEAAAILAGDSLLTYAFDIIASDETELDATTRIKLVCALTRASGLGGM 163 Query: 66 AGGQILDLAGEGRFGDREPVDVARVQQMKTGALLRFGCIAGAILGQASQKEYQALDDYGK 125 AGGQ LDL E R D + +Q MKTGAL+RF C AGAI+ ASQ++ + + ++G Sbjct: 164 AGGQALDLMAETRKPDE--AGIITLQAMKTGALIRFACEAGAIIAGASQEDRERMAEFGS 221 Query: 126 ALGEAFQIADDLLDVEGDAAALGKPAGADAALGKTTFVTQLGIDGAKQRVRDLLARADAA 185 A+G AFQ+ADDLLDV DA +GK G DAA GK T V+ GID +Q++ L+A+A++ Sbjct: 222 AIGLAFQLADDLLDVTADAGTMGKATGKDAAAGKATLVSLHGIDWTRQQLSGLVAQAESL 281 Query: 186 LSVFGDRSDVLRAAAHFVAERKN 208 L+ FG+ ++ L+ AA F+AER+N Sbjct: 282 LAPFGEDAEPLKQAARFIAERQN 304 >CC2069 [H] COG0142 Geranylgeranyl pyrophosphate synthase Ccr Caulobacter vibrioides Length = 294 Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 102/205 (49%), Positives = 134/205 (65%), Gaps = 7/205 (3%) Query: 6 LRRGRPTLHKAYDDATAILAGDALLTIAFDIITRDAIHKDAQVRLLLTRALARASGIGGM 65 +RRGRPT+HK YD+ATAILAGDAL T AF+I+ H D VR L R LA ASG GM Sbjct: 95 VRRGRPTVHKQYDEATAILAGDALQTAAFEIMAHPDTHDDGHVRSELVRKLAIASGARGM 154 Query: 66 AGGQILDLAGEGRFGDREPVD-VARVQQMKTGALLRFGCIAGAILGQASQKEYQALDDYG 124 GGQ++DL G R+ + VAR+Q++KTGAL+ F I+ +A + E AL + Sbjct: 155 CGGQMIDL-----LGVRDDLGAVARMQRLKTGALIAFAFEIPLIIARAKESERSALMAFA 209 Query: 125 KALGEAFQIADDLLDVEGDAAALGKPA-GADAALGKTTFVTQLGIDGAKQRVRDLLARAD 183 + LG A+QI DD+LD EGD LGK A G DAA GK +VT LG+D AK+RV L + Sbjct: 210 QDLGLAYQIVDDILDAEGDEETLGKAAGGKDAAKGKANYVTLLGLDAAKERVTLLAEQTR 269 Query: 184 AALSVFGDRSDVLRAAAHFVAERKN 208 + L +FG+R++ LRA+ FV +R+N Sbjct: 270 SHLEIFGERAEHLRASVDFVLDRRN 294 >AGc4933 [H] COG0142 Geranylgeranyl pyrophosphate synthase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 103/203 (50%), Positives = 143/203 (70%), Gaps = 2/203 (0%) Query: 6 LRRGRPTLHKAYDDATAILAGDALLTIAFDIITRDAIHKDAQVRLLLTRALARASGIGGM 65 LRRG+PT+H+ +D+ATAILAGD+LLT+AFDII D A+ + L +LARA+GIGGM Sbjct: 104 LRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGM 163 Query: 66 AGGQILDLAGEGRFGDREPVDVARVQQMKTGALLRFGCIAGAILGQASQKEYQALDDYGK 125 AGGQ LDLA E + D + + +Q MKTGALLRF C AGAI+ ++Q E Q L +G+ Sbjct: 164 AGGQALDLAAEKKAPDED--GIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGE 221 Query: 126 ALGEAFQIADDLLDVEGDAAALGKPAGADAALGKTTFVTQLGIDGAKQRVRDLLARADAA 185 +G +FQ+ADDLLD+ DAA +GK G DAA GK T V G A++++++ +A A Sbjct: 222 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASEL 281 Query: 186 LSVFGDRSDVLRAAAHFVAERKN 208 L+ +G+++ +L AAA F+AERK+ Sbjct: 282 LAPYGEKAAILIAAARFIAERKS 304 >SMc03884 [H] COG0142 Geranylgeranyl pyrophosphate synthase Sme Sinorhizobium meliloti Length = 304 Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/203 (48%), Positives = 131/203 (64%), Gaps = 2/203 (0%) Query: 6 LRRGRPTLHKAYDDATAILAGDALLTIAFDIITRDAIHKDAQVRLLLTRALARASGIGGM 65 +RRG+PT+H A+D+ATAILAGD+LLT AFDI+ + + L ALARA+G GGM Sbjct: 104 MRRGKPTVHVAFDEATAILAGDSLLTFAFDIVAAPETALSDRQKTTLVLALARAAGHGGM 163 Query: 66 AGGQILDLAGEGRFGDREPVDVARVQQMKTGALLRFGCIAGAILGQASQKEYQALDDYGK 125 AGGQ LDLA E D + +Q MKTGAL+RF C AGAI+ A ++ + L +G Sbjct: 164 AGGQALDLAAEKSAPDE--AGIVLLQSMKTGALIRFACEAGAIIADAPAEDRRRLRAFGD 221 Query: 126 ALGEAFQIADDLLDVEGDAAALGKPAGADAALGKTTFVTQLGIDGAKQRVRDLLARADAA 185 +G AFQ+ADDLLD+ DAA +GK G DAA GK T V+ G A++R+ L+A A+ Sbjct: 222 KIGLAFQLADDLLDLTADAAIVGKATGKDAARGKGTLVSLHGQPWAERRLESLVAEAEGL 281 Query: 186 LSVFGDRSDVLRAAAHFVAERKN 208 L +G RS +L A F+A R+N Sbjct: 282 LEPYGPRSAILAETARFIANRRN 304 >slr0739 [H] COG0142 Geranylgeranyl pyrophosphate synthase Syn Synechocystis Length = 302 Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 116/207 (56%), Gaps = 1/207 (0%) Query: 1 MDNSDLRRGRPTLHKAYDDATAILAGDALLTIAFDIITRDAIHKDAQVRLLLTRALARAS 60 MDN D RRG+PT HK Y + AILAGD LL AF+ + D Q L + L R Sbjct: 96 MDNDDFRRGKPTNHKVYGEDIAILAGDGLLAYAFEYVVTHTPQADPQALLQVIARLGRTV 155 Query: 61 GIGGMAGGQILDLAGEGRFGDREPVDVARVQQMKTGALLRFGCIAGAILGQASQKEYQAL 120 G G+ GGQ+LDL EGR D P + + KTGALL + GAIL A+ ++ Q L Sbjct: 156 GAAGLVGGQVLDLESEGR-TDITPETLTFIHTHKTGALLEASVLTGAILAGATGEQQQRL 214 Query: 121 DDYGKALGEAFQIADDLLDVEGDAAALGKPAGADAALGKTTFVTQLGIDGAKQRVRDLLA 180 Y + +G AFQ+ DD+LD+ LGK AG D K T+ + LG++ ++ + + L+ Sbjct: 215 ARYAQNIGLAFQVVDDILDITATQEELGKTAGKDVKAQKATYPSLLGLEASRAQAQSLID 274 Query: 181 RADAALSVFGDRSDVLRAAAHFVAERK 207 +A AL FG ++ L+A A ++ RK Sbjct: 275 QAIVALEPFGPSAEPLQAIAEYIVARK 301