BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0076.0006.p         (142 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr8230 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...    88   6e-18
MA0180 [K] COG1846 Transcriptional regulators Mac Methanosarcina...    62   3e-10
AGc2008 [K] COG1846 Transcriptional regulators Atu Agrobacterium...    62   4e-10

>mlr8230 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 157

 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 84/143 (58%), Gaps = 17/143 (11%)

Query: 11  FTLGEVFRLIRVYADKEAARYGITRAQWAVLSKVERQEGLKQTELAELLEVQPITLTRLI 70
           F + +V RL+R   +  A+  G++ AQW ++ +V ++EG+ Q  LAELLE++PI+++RL+
Sbjct: 11  FLIHDVQRLMRKRFETRASGLGLSSAQWRLMVRVAKEEGVTQARLAELLEIEPISVSRLV 70

Query: 71  DKLCDNGWIERRSDENDRRVNRLY--LKXATV---------------LEGISPADAYRLL 113
           D++ + GWIERR+D  DRRV  ++   K +                 L G+SP D   L+
Sbjct: 71  DRMEEGGWIERRADAADRRVRMIFPTAKASAAYAEVKSLAGEVYEESLVGVSPEDRRVLI 130

Query: 114 TQLESIKENVRNAVQTPAGEPSR 136
             L+++ +N+ +   +   EP++
Sbjct: 131 RALDAMAQNLADGDTSEKVEPTK 153


>MA0180 [K] COG1846 Transcriptional regulators Mac Methanosarcina
           acetivorans str.C2A
          Length = 156

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query: 16  VFRLIRVYADKEAARYGITRAQWAVLSKVERQEGLKQTELAELLEVQPITLTRLIDKLCD 75
           ++R  +VY  K+   YGI   Q+  L ++ R++G+ Q  L++ L++   T TR I KL D
Sbjct: 28  LYRYEQVYIGKKIEPYGIGSGQFPFLMRLYREDGVNQESLSDYLKIDKGTTTRAIQKLAD 87

Query: 76  NGWIERRSDENDRRVNRLYL 95
            G++ R+ DE DRR  R++L
Sbjct: 88  EGYVFRQRDEKDRRSYRIFL 107


>AGc2008 [K] COG1846 Transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 159

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 47/78 (60%)

Query: 18  RLIRVYADKEAARYGITRAQWAVLSKVERQEGLKQTELAELLEVQPITLTRLIDKLCDNG 77
           R +R + D      G+T A+   L  + R+  L QTELAE +E++  TL R++D +    
Sbjct: 27  RKLRAFFDARVGESGLTLARARALFALSRRGPLTQTELAEEMEIETPTLVRVLDGMEKQN 86

Query: 78  WIERRSDENDRRVNRLYL 95
            IERRSDENDRR  R+++
Sbjct: 87  LIERRSDENDRRAKRIHM 104