BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0036.p (210 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1686 [T] COG4566 Response regulator Sme Sinorhizobium meliloti 211 9e-55 SMa0940 [T] COG4566 Response regulator Sme Sinorhizobium meliloti 191 1e-48 AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci... 164 1e-40 mll0983 [T] COG4566 Response regulator Mlo Mesorhizobium loti 158 9e-39 RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum 157 2e-38 >SMa1686 [T] COG4566 Response regulator Sme Sinorhizobium meliloti Length = 213 Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 117/200 (58%), Positives = 141/200 (70%), Gaps = 1/200 (0%) Query: 1 MHAYVHIVDDDASFRTALERRLKLAGYRVATYASASELLGQLPDDEETGCILLDVRIPGM 60 + VHIVDDD SFRTA+ R L +G+RVA Y S + L Q D E GC+LLD+ +PG+ Sbjct: 4 LEPIVHIVDDDQSFRTAVGRLLAASGFRVALYESGDQFLAQFADGE-PGCVLLDLGLPGL 62 Query: 61 SGPDLQRRLNELGSTLPIVFLTGYADTATTVQAIKAGAEDFLTKPIASEQLIEAINRAAA 120 SG +LQ RL E LPIVFLTG D TVQA+KAGAEDFL KP E L+E I RA Sbjct: 63 SGLELQDRLAEKAPLLPIVFLTGRGDIRATVQAMKAGAEDFLEKPTPKEVLLETIGRALR 122 Query: 121 RHELARGRRTRLDSLRALLARLTPRERQVFDLIVRGRINKQIAHELGTTERTIKAHRHQV 180 R+ L R + R +LR LA LTPRE +VF LIVRG++NKQIA LGT+ERT+KAHRH + Sbjct: 123 RYALRRLEQDRKHALRRRLANLTPREFEVFGLIVRGKLNKQIAQALGTSERTVKAHRHNL 182 Query: 181 MEKMQVQSLAELVSIAEQLG 200 MEK+ +SLAE VSIAE+LG Sbjct: 183 MEKLGTRSLAETVSIAERLG 202 >SMa0940 [T] COG4566 Response regulator Sme Sinorhizobium meliloti Length = 184 Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/179 (55%), Positives = 130/179 (72%), Gaps = 2/179 (1%) Query: 22 LKLAGYRVATYASASELLGQLPDDEETGCILLDVRIPGMSGPDLQRRLNELGSTLPIVFL 81 L +G+++ +Y+S ELL +LP +GCILLD+++PG+SG +LQ RL +L LP+VFL Sbjct: 2 LAASGFQIESYSSGEELLARLPRG--SGCILLDLQMPGLSGLELQARLADLAPLLPVVFL 59 Query: 82 TGYADTATTVQAIKAGAEDFLTKPIASEQLIEAINRAAARHELARGRRTRLDSLRALLAR 141 TG D TV+A+KAGA DFL KP +S ++EA+ RA E R R +L LLA Sbjct: 60 TGRGDIGITVRAMKAGAHDFLEKPASSAAVLEAVERALQLCETRRKEHDRAQALHTLLAS 119 Query: 142 LTPRERQVFDLIVRGRINKQIAHELGTTERTIKAHRHQVMEKMQVQSLAELVSIAEQLG 200 LTPRE QV D IVRG+ NKQIA EL T+ERT+KAHRH+VMEK+ V+SLAE+VS+AE+LG Sbjct: 120 LTPRESQVSDQIVRGKRNKQIAFELNTSERTVKAHRHKVMEKLGVRSLAEVVSMAERLG 178 >AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 218 Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 128/202 (63%), Gaps = 1/202 (0%) Query: 1 MHAYVHIVDDDASFRTALERRLKLAGYRVATYASASELLGQLPDDEETGCILLDVRIPGM 60 + V IVDDD S R AL + + + SA+ L + + GC+LLDVR+PG+ Sbjct: 12 LSPVVFIVDDDVSMREALTDLFRSMKFDAEAFDSAAAFLEK-ANLNRHGCLLLDVRLPGI 70 Query: 61 SGPDLQRRLNELGSTLPIVFLTGYADTATTVQAIKAGAEDFLTKPIASEQLIEAINRAAA 120 SG D Q +L +G+ +PI+F+TG+ D +V+A+KAGA DFLTKP + +++A+ A Sbjct: 71 SGLDFQVQLERVGNRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAAAME 130 Query: 121 RHELARGRRTRLDSLRALLARLTPRERQVFDLIVRGRINKQIAHELGTTERTIKAHRHQV 180 R R + +++ +L +LTPRER+V +VRG +NKQIA+ELG +E T+K HR V Sbjct: 131 RDASRRRESAQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHRGNV 190 Query: 181 MEKMQVQSLAELVSIAEQLGTR 202 M KM+ +S+A+LV AE +G + Sbjct: 191 MRKMEARSVADLVRKAELIGEK 212 >mll0983 [T] COG4566 Response regulator Mlo Mesorhizobium loti Length = 246 Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 88/198 (44%), Positives = 119/198 (60%), Gaps = 1/198 (0%) Query: 2 HAYVHIVDDDASFRTALERRLKLAGYRVATYASASELLGQLPDDEETGCILLDVRIPGMS 61 V IVDDDAS R A+ + AG + +AS ELL D GC++LDVR+PG S Sbjct: 36 EPLVIIVDDDASVRQAVSELILSAGLQPVCFASTGELLDADVLDN-PGCLILDVRMPGAS 94 Query: 62 GPDLQRRLNELGSTLPIVFLTGYADTATTVQAIKAGAEDFLTKPIASEQLIEAINRAAAR 121 G DLQ RL + G+ P++FLTG+ D +VQA+KAGA DFLTKP+ + L++A+ A Sbjct: 95 GLDLQHRLAQRGNPKPVIFLTGHGDIPMSVQAMKAGAVDFLTKPVRDQTLLDAVIAGIAI 154 Query: 122 HELARGRRTRLDSLRALLARLTPRERQVFDLIVRGRINKQIAHELGTTERTIKAHRHQVM 181 + R + L A LTPRERQV + RGR++KQIA +LG +E T+K HR M Sbjct: 155 DAVQRKEAAIVKRNTELFAALTPRERQVLREVARGRVSKQIAFDLGISEITVKLHRGNAM 214 Query: 182 EKMQVQSLAELVSIAEQL 199 KM+ S+ +L+ E L Sbjct: 215 RKMKAASIGQLIQSWETL 232 >RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum Length = 210 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%) Query: 5 VHIVDDDASFRTALERRLKLAGYRVATYASASELLGQLPDDEETGCILLDVRIPGMSGPD 64 V +VDDD + R +L L+ GY V TY SA E L E GC++LDVR+ GMSGP+ Sbjct: 15 VFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLVDDKRGEGVGCLILDVRMQGMSGPE 74 Query: 65 LQRRLNELGSTLPIVFLTGYADTATTVQAIKAGAEDFLTKPIASEQLIEAINR--AAARH 122 LQ RL + +PIVF+TG+ D V +K GA DF+ KP +L E + R + AR Sbjct: 75 LQDRLLAENNRMPIVFVTGHGDVPMAVSTMKKGAVDFIEKPFDESELRELVERMLSKART 134 Query: 123 ELARGRRTRLDSLRALLARLTPRERQVFDLIVRGRINKQIAHELGTTERTIKAHRHQVME 182 E + R + + LL+RLT RE+QV + IV GR+NKQIA +LG + +T++AHR +ME Sbjct: 135 EDSAAREQK--AANDLLSRLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIME 192 Query: 183 KMQVQSLAELVSIA 196 K+ V ++A+L+ +A Sbjct: 193 KLNVNTVADLLRLA 206