BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0016.p (683 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2376 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum 339 1e-92 VC1516 [C] COG1145 Ferredoxin Vch Vibrio cholerae 243 9e-64 Cj1377c [C] COG1145 Ferredoxin Cje Campylobacter jejuni 121 4e-27 >RSc2376 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum Length = 719 Score = 339 bits (870), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 266/720 (36%), Positives = 347/720 (48%), Gaps = 95/720 (13%) Query: 27 LICSCEGTMRLDVAAIQ-----RGCP-NCEIRSHRHLCGAELEHFRNAAKTEGPLTVACT 80 L+CSC TM LD A+ G P + ++H LC E+ F A + + VACT Sbjct: 4 LVCSCNHTMPLDADAVSDGLRASGAPIDAPGQTHHLLCRREIGAFSRALDGDEDVIVACT 63 Query: 81 QQAGQFTNEMGERPGAIS----FVNIRETAGWS----RD--GAKAGPKMXLAAAAIPAPD 130 Q+A FT E+ R G ++ FVN+RET GWS RD G A LA A +PAPD Sbjct: 64 QEAALFT-EVAARHGGVTAPIHFVNVRETGGWSAGARRDARGFHAKAAALLAVAGLPAPD 122 Query: 131 -YPLVTLSSDGIILIYGRDETAIEAGRLLADHLDVTVML----RKPADVVPPAAAVFPIV 185 P+V SDG +LI G E A+ LAD L VTV+ R + PP A +PI Sbjct: 123 PVPVVDYRSDGSLLIVGPAERALPWAERLADQLSVTVLATGRDRGAGPLSPPMARRWPIQ 182 Query: 186 KGTIRNARGHFGGFELT------------------IDDYAQPRPSSRARFEFEAPRN--- 224 G G G F++ ID + + + + EA R+ Sbjct: 183 AGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAIDTLYQIDLEACRDHRD 242 Query: 225 --------------------GAISRCDLVLDLSGEPPLFSAHDLRDGYLRADPRDSAAML 264 A R DL+LDL+ + P F+ H GY A D+ L Sbjct: 243 CVRACGEAMAIDFGRLDAPQTASGRFDLILDLN-DAPAFAQHQPPQGYFHAGA-DAGRQL 300 Query: 265 RAVLAARDLVGSFDKPRYVDFTPSLCAHSRSKLTGCHRCLDLCPTGAITP---DG-DHVA 320 A LA LVG F+KPR+ + S+CAH R+ GC C+ +C AIT DG V Sbjct: 301 TASLALLQLVGEFEKPRFFQYKASICAHGRNGQVGCDACVRVCSAAAITSQWKDGRGSVH 360 Query: 321 VNAQVCAGCGQCAAACPTGAASYALPPADTQLQILRAMLRAYREAGGTHPVLLLHD---- 376 V +C GCG C ACPTGA +YA P A Q + L+ +L + AGG V+LLH+ Sbjct: 361 VTPNLCVGCGACTTACPTGALTYAYPSAPYQGRKLKTLLSTHAAAGGHDAVVLLHNGGRG 420 Query: 377 ----SQHGTXARHG--DGLPANVLPLAVNELTQIGLEAIIGAFAYGAAAVRLLLRAKPRH 430 Q G AR G G+P NVLP+ V GL+ + A AYGAA + +LL Sbjct: 421 RALIEQLGRAARTGKAQGVPVNVLPVEVFHAASTGLDLWLSALAYGAARIAILLTEDDAP 480 Query: 431 DLTGSL-QTIQMAETILAGLG--FDGRRVSTIETDDPDTLAEQLTGI---GPLAGLDN-- 482 L + +A +LAGLG D V I+ D L +L + GP+ G Sbjct: 481 QYRAMLAEQAAVARAVLAGLGEPADAAGVVLIDAPDAGALDARLNAVEVCGPVQGFRADM 540 Query: 483 -PATFLTVGKRGDLLRFGLSELHRLAPKPVDVIALPEGAPVGAITVDVSGCTLCLSCVSA 541 PATF + + L F L L R A VI LP GAP GAI VD + CTLC++CVSA Sbjct: 541 PPATFAVAAAKRETLAFALDHLARHAGAVDAVIPLPAGAPFGAIEVDRARCTLCMACVSA 600 Query: 542 CPTGALRADPDRPVLKFVEDACVQCGLCQSTCPEKVIRLTPQIDFRARRAPARVIKEEEP 601 CP+ ALR +RPVL +E CVQCGLC +TCPE I L P+++ A V+ E +P Sbjct: 601 CPSQALRDAAERPVLSMIERNCVQCGLCDTTCPEDAIALVPRLNLSADARQPVVLNETQP 660 Query: 602 ALCVRCGTPFGVKSTIDRIATKLEGRHWMY--PAGDRRTEALRMCADCRVIVMSEQQFDP 659 C+RCG PFG + + +L G H + AG+R L+MC DCRVI M E P Sbjct: 661 FHCIRCGKPFGTAQMVAAMMARL-GAHPAFAGAAGER----LKMCGDCRVIDMLEGGEQP 715 >VC1516 [C] COG1145 Ferredoxin Vch Vibrio cholerae Length = 553 Score = 243 bits (621), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 171/489 (34%), Positives = 239/489 (48%), Gaps = 46/489 (9%) Query: 194 GHFGGFELTIDDYAQPRPSSRARFEFEAPRNGAISRCDLVLDLSGEPPLFSAHDLRDGYL 253 G G F + ++++ + R G S D+VLD+S L S GY Sbjct: 90 GFLGAFSVNVENHGK-------RVNLAQAAIGGNSF-DIVLDMSLNG-LMSEEVPVPGYF 140 Query: 254 RADPRDSAAMLRAVLAARDLVGSFDKPRYVDFTPSLCAHSRSKLTGCHRCLDLCPTGAIT 313 R + A+ L+G+FDKP+Y P LCAHS + GC RC+D CP GA++ Sbjct: 141 PVG-RGYPKLADALEEIPTLMGTFDKPKYFRLDPDLCAHSSRGVKGCERCVDACPAGALS 199 Query: 314 PDGDH-----VAVNAQVCAGCGQCAAACPTGAASYALP-PADTQLQILRAMLRAYREAGG 367 +G + +N +C G G CA ACPT A YALP P DTQ + + +L Y +AGG Sbjct: 200 SEGSEQTGHRIQINPYLCQGVGTCATACPTEAIHYALPNPTDTQ-KFIERLLANYHQAGG 258 Query: 368 THPVLLLHDSQHGTXARHG-DGLPANVLPLAVNELTQIGLEAIIGAFAYGAAAVRLLLRA 426 P++L+ S+H + LP NV+P+ V EL +G+++ A GA V L A Sbjct: 259 EKPIVLICSSRHESYNVMALKVLPDNVIPVVVEELPSVGIDSWFAALVNGATQV---LFA 315 Query: 427 KPRHDLTGSLQTI-----QMAETILAGLGFDGRRVSTIETDD----PDTLAEQLTGIGPL 477 RH + ++Q I MA+++L LG + + + L EQ G+ L Sbjct: 316 ASRH-MPPTIQRILNQEMSMAQSLLTHLGLPKETIDILYLESLREGMPVLCEQPLGLK-L 373 Query: 478 AGLDNPATFLTVGKRGDLLRFGLSELHRLAPKPVDVIALPEGAPVGAITVDVSGCTLCLS 537 L +G + + L L L V L AP G I S CTLC+S Sbjct: 374 GDL--------IGNKRERLFTALDALAETLNAQPSVQPLSISAPYGTIECQTSDCTLCMS 425 Query: 538 CVSACPTGALRADPDRPVLKFVEDACVQCGLCQSTCPEKVIRLTPQIDF-RARRAPARVI 596 CV+ CPT AL D P L+F+E CVQCGLC CPE+V+ TPQ+++ +A R + Sbjct: 426 CVAVCPTRALHLAGDSPALRFIEQDCVQCGLCVKACPEQVLSATPQLNWNKAARQGVVTL 485 Query: 597 KEEEPALCVRCGTPFGVKSTIDRIATKLEGR-HWMYPAGDRRTEALRMCADCRVIVMSE- 654 +EEPA C+RC PF +S I + TKL G H+ P R + MC DCRV+ M E Sbjct: 486 HQEEPAKCLRCHKPFAPQSMITMLQTKLRGHSHFATPEALNR---IAMCEDCRVVDMFEA 542 Query: 655 QQFDPIQDV 663 DP Q + Sbjct: 543 MAHDPEQQL 551 >Cj1377c [C] COG1145 Ferredoxin Cje Campylobacter jejuni Length = 553 Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 35/379 (9%) Query: 282 YVDFTPSLCAHSRSKLTGCHRCLDLCPTGAITPDGD--HVAVNAQVCAGCGQCAAACPTG 339 Y+ + S+C + + C +C ++CPT AI D + H+ + C GCG C + CP+G Sbjct: 196 YISYNASVCQYHERRSEHCAKCAEICPTVAILKDDENKHLEFSQVDCLGCGGCISVCPSG 255 Query: 340 AASYALPPADTQLQILRAMLRAYREAGGTHPVLLLHDSQHGTXARHGDGLPANVLPLAVN 399 + YA P ++ + Y++ +L++ + + LP +VLP + Sbjct: 256 SLDYAPMPRES----FFTLCEFYKD----KKILII--PKKMSLENLNLALPKDVLPFMIE 305 Query: 400 ELTQIGLEAIIGAFAYGAAAVRLLLRAKPRHDLTGSLQTIQMAETILAGLGFDGR--RVS 457 + + A + R GS + I + T F + V+ Sbjct: 306 GEKWLSSMHFLTLLQNSGANLVFYTDFVSR----GSNEAIVLLNTFFER-KFQKKAIFVA 360 Query: 458 TIETDDPDTLAEQLTGIGPLAGLDNPATFLTVGKRGDLLRFGLSELHRLAPKPVDVIALP 517 E + + L EQ I L + T T R ++ + K D ++ Sbjct: 361 KDEKELQNVLKEQ-EFIQDLKYDFHNNTLTT--------RENFAKRMQEMIKNEDFGSME 411 Query: 518 EGAPV--GAITVDVSGCTLCLSCVSACPTGALRADPDRPVLKFVEDACVQCGLCQSTCPE 575 G + G + ++ + CTLCLSCV AC GAL AD LKF C CG C+ +C E Sbjct: 412 SGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQENALKFNASLCTTCGYCELSCAE 471 Query: 576 K-VIRLTPQ-IDFRARRAPARVIKEEEPALCVRCGTPFGVKSTIDRIATKLEGRHWMYPA 633 K ++L ++FRA + + ++E C+ CG F K +++IA ++ + + Sbjct: 472 KDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKEFATKKAVEKIANLMKPK---FGN 528 Query: 634 GDRRTEALRMCADCRVIVM 652 + + + L CADC+ VM Sbjct: 529 DENKIKTLYCCADCKAKVM 547