BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0075.0012.p (434 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2020 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solana... 509 e-144 PA2550 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aerug... 485 e-137 DRA0196 [I] COG1960 Acyl-CoA dehydrogenases Dra Deinococcus radi... 484 e-136 CC0690 Non COG 452 e-127 MT0163 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tub... 410 e-114 >RSc2020 [I] COG1960 Acyl-CoA dehydrogenases Rso Ralstonia solanacearum Length = 420 Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust. Identities = 257/402 (63%), Positives = 306/402 (76%), Gaps = 8/402 (1%) Query: 6 SERSQQLAARLQRFMMEHIYPNERRYYQEAE---RLG-PWAVHPVVEELKPLAQQAGLWN 61 S + +++ ARL F HIYPNE R+++E E R G W V+E LKPLA++AGLWN Sbjct: 6 SPKVKEMQARLLDFFDRHIYPNEHRFHEEVEANRRAGNAWVPTRVIEALKPLAREAGLWN 65 Query: 62 LFLPAHE---DGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDRW 118 LFLP +GL+NLEYAPLCEIMGR APEV NCSAPDTGNMET+ RY +EA KDRW Sbjct: 66 LFLPRSPRAPEGLSNLEYAPLCEIMGRVPWAPEVFNCSAPDTGNMETLERYASEALKDRW 125 Query: 119 LKPLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKIII 178 L+PLL GEIRS+F MTEP VASSDATN+ I R GDDYVINGRKW+++GA DPRC + I Sbjct: 126 LEPLLRGEIRSAFLMTEPAVASSDATNIECRIERQGDDYVINGRKWWSSGAGDPRCAVYI 185 Query: 179 FMGQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAAN 238 MG+T+PD RH++QSMI+VP + G+ V+R L V G+ P EV NVRVPA N Sbjct: 186 VMGKTNPD-AGRHEQQSMIVVPADAPGITVLRPLSVFGYDDAPHGHMEVDLKNVRVPATN 244 Query: 239 MLLGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTLE 298 +LLGEGRGFEIAQGRLGPGRIHHCMR IG++ER LE MC+R R+AFGKP+A+ +V E Sbjct: 245 ILLGEGRGFEIAQGRLGPGRIHHCMRSIGVAERALELMCKRLSSRIAFGKPIAQHSVWHE 304 Query: 299 RVAEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGGG 358 R+AEAR I+QARLLTL+AAYMMDTVGNK AR EIAMIKVVAPN+A ++DWAIQA GGG Sbjct: 305 RIAEARCMIEQARLLTLKAAYMMDTVGNKVARAEIAMIKVVAPNVACQVIDWAIQAHGGG 364 Query: 359 GTNNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWLN 400 G + D L++A A R LRLADGPDEVHR I KLEL + L+ Sbjct: 365 GVSGDFPLASAYAHQRTLRLADGPDEVHRAAIAKLELAKHLH 406 >PA2550 [I] COG1960 Acyl-CoA dehydrogenases Pae Pseudomonas aeruginosa Length = 409 Score = 485 bits (1249), Expect = e-137, Method: Compositional matrix adjust. Identities = 240/401 (59%), Positives = 297/401 (74%), Gaps = 3/401 (0%) Query: 1 VDITQSERSQQLAARLQRFMMEHIYPNERRYYQEAERLGPWAVHPVVEELKPLAQQAGLW 60 +D S + Q+L R+ FM H+YP E + ++ W ++EELK A+ GLW Sbjct: 1 MDFAYSPKVQELRERVSAFMEAHVYPAEAVFERQVAEGDRWQPTAIMEELKAKAKAEGLW 60 Query: 61 NLFLPAHE--DGLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDRW 118 NLFLP E GL N EYAPL EIMGRS + PE NC+APDTGNME ++RYG+E QK W Sbjct: 61 NLFLPESEYGAGLANHEYAPLAEIMGRSLIGPEPFNCAAPDTGNMEVLVRYGSEEQKRTW 120 Query: 119 LKPLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKIII 178 L+PLL+GEIRS+FAMTEP VASSDATN+ + R GDD+VINGRKW+T+GA DPRCKI+I Sbjct: 121 LEPLLSGEIRSAFAMTEPGVASSDATNMEARAERQGDDWVINGRKWWTSGACDPRCKILI 180 Query: 179 FMGQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAAN 238 FMG T+PD P RH++ SMILVP +T GV ++R LPV G+ P +EV+F NVRVP N Sbjct: 181 FMGLTNPDAP-RHQQHSMILVPVDTPGVKILRPLPVFGYDDAPHGHAEVLFENVRVPYEN 239 Query: 239 MLLGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTLE 298 ++LGEGRGFEIAQGRLGPGRIHHCMR IG++ER LE MC+RA+ R AFGKPLA ++ Sbjct: 240 VILGEGRGFEIAQGRLGPGRIHHCMRSIGMAERALELMCKRAVSRTAFGKPLARLGGNID 299 Query: 299 RVAEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGGG 358 +A++RM+I+ ARLLTL+AAYMMDTVGNK A+ EIA IKVVAPN+A ++D AIQ GG Sbjct: 300 HIADSRMEINMARLLTLQAAYMMDTVGNKIAQSEIAQIKVVAPNVALKVIDRAIQMHGGA 359 Query: 359 GTNNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRRWL 399 G +ND L+ A R LRLADGPDEVHR IGK EL +++ Sbjct: 360 GVSNDFPLAYWYAMQRTLRLADGPDEVHRAAIGKFELGKYV 400 >DRA0196 [I] COG1960 Acyl-CoA dehydrogenases Dra Deinococcus radiodurans Length = 415 Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust. Identities = 246/397 (61%), Positives = 291/397 (73%), Gaps = 8/397 (2%) Query: 8 RSQQLAARLQRFMMEHIYPNERRYYQEAERLGPWAVHPVVEELKPLAQQAGLWNLFLPAH 67 R+Q L RL RFM +IYPNE ++++ E WA ++EELKP A+ GLWNLFLP Sbjct: 9 RAQDLRERLLRFMDTYIYPNEAEFHRQVESGERWAPVELIEELKPKARAEGLWNLFLPPA 68 Query: 68 ED-------GLTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMETILRYGTEAQKDRWLK 120 D GLTNLEYA LCEIMGR APEV NC+APDTGNME I RYGT Q+++WL Sbjct: 69 SDPEGKFGAGLTNLEYAGLCEIMGRVWWAPEVFNCNAPDTGNMEVIARYGTPEQQEQWLL 128 Query: 121 PLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKIIIFM 180 PLL GEIRS+F+MTEP VASSDATN+ + IVRDGD+YVINGRKW+++GA D RCK+ IFM Sbjct: 129 PLLNGEIRSAFSMTEPQVASSDATNIEAQIVRDGDEYVINGRKWWSSGAGDSRCKVSIFM 188 Query: 181 GQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRASEVIFTNVRVPAANML 240 G+TDP P RH +QSMILVP + GV + R+L V GF P E+ F NVRVP NML Sbjct: 189 GKTDPQAP-RHLQQSMILVPFDAPGVKIERALQVFGFDDAPHGHMEMSFDNVRVPVTNML 247 Query: 241 LGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQTVTLERV 300 LGEGRGFEIAQGRLGPGRIHHCMRL+G +ER LE M R+ +R+AFGKPLA T E + Sbjct: 248 LGEGRGFEIAQGRLGPGRIHHCMRLVGQAERALELMIERSAQRIAFGKPLALHQHTRELI 307 Query: 301 AEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQAFGGGGT 360 A++RM+IDQARLLTL+AA+ MDTVGNK A+ EIA IKVVAPNMA ++D AIQ +GG G Sbjct: 308 AQSRMEIDQARLLTLKAAHTMDTVGNKDAKGEIAAIKVVAPNMALRVIDRAIQVYGGAGV 367 Query: 361 NNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRR 397 D L+ A R LRLADGPD VH + K ELRR Sbjct: 368 CQDTPLAMMYAQARTLRLADGPDIVHTETVAKEELRR 404 >CC0690 Non COG Length = 435 Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust. Identities = 228/414 (55%), Positives = 285/414 (68%), Gaps = 16/414 (3%) Query: 1 VDITQSERSQQLAARLQRFMMEHIYPNERRYYQEAERLGP--WAVHPVVEELKPLAQQAG 58 +D S + + R+ FM EH+YP Y E LG W V VVE+LK A+ AG Sbjct: 1 MDFDISPKQRAFLDRVTAFMDEHVYPAIPAYEAEMNVLGAERWKVVQVVEDLKKKAKAAG 60 Query: 59 LWNLFLPAHEDG-------------LTNLEYAPLCEIMGRSHLAPEVLNCSAPDTGNMET 105 LWN F+P H LTNLEY+ + E +G+ A EV NCSAPDTGNME Sbjct: 61 LWNFFMPPHSGQTHVDDTFQFEGVQLTNLEYSLIAEQLGKVGFASEVFNCSAPDTGNMEV 120 Query: 106 ILRYGTEAQKDRWLKPLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWY 165 ++RYGT AQK++WL+PL+ GEIRS+F MTEP VASSDATN+ + I RDGD YVINGRKW+ Sbjct: 121 LMRYGTLAQKEKWLRPLMNGEIRSAFLMTEPAVASSDATNIETRIERDGDHYVINGRKWW 180 Query: 166 TTGATDPRCKIIIFMGQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRAS 225 ++G DPRCK+ I MG+TDPDN RH +QS +LVP ++ G+ +VR LPV G+ P + Sbjct: 181 SSGVGDPRCKVAIVMGKTDPDNASRHAQQSQVLVPLDSPGIEIVRMLPVFGYDDAPHGHA 240 Query: 226 EVIFTNVRVPAAN-MLLGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRV 284 EVI NVRVP + +LLGEGRGFEIAQGRLGPGRIHHCMR IG +E LE+MC+R + R Sbjct: 241 EVILKNVRVPIEDALLLGEGRGFEIAQGRLGPGRIHHCMRTIGTAEVALEKMCQRLMSRK 300 Query: 285 AFGKPLAEQTVTLERVAEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMA 344 AFGK +++ +V ERVA+AR+ I+ RLL L+AA MMD GNK+AR EIAMIKV AP +A Sbjct: 301 AFGKYVSDHSVWEERVADARIDIEMCRLLCLKAADMMDKAGNKSARLEIAMIKVAAPRLA 360 Query: 345 QTIVDWAIQAFGGGGTNNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRRW 398 I+D AIQA GGGG D L+ A A R LRLADGPDEVH+ I ++E ++ Sbjct: 361 LKIIDDAIQAHGGGGVTTDFGLAKAYAGIRTLRLADGPDEVHQRTIARMEYGKY 414 >MT0163 [I] COG1960 Acyl-CoA dehydrogenases MtC Mycobacterium tuberculosis CDC1551 Length = 407 Score = 410 bits (1055), Expect = e-114, Method: Compositional matrix adjust. Identities = 218/403 (54%), Positives = 275/403 (68%), Gaps = 12/403 (2%) Query: 1 VDITQSERSQQLAARLQRFMMEHIYPNERRYYQEAERLGPWAVH---PVVEELKPLAQQA 57 +D S ++ RL FM EH++ E Y GP A H P++EELK A+ Sbjct: 1 MDFAMSAKAIDYRTRLSDFMTEHVFGAEADYDDYRRAAGP-ADHTAPPIIEELKTKAKDR 59 Query: 58 GLWNLFLPAHEDGLTNLEYAPLCEIMGRS-HLAPEVLNCSAPDTGNMETILRYGTEAQKD 116 GLWNLFL A E GLTNLEYAPL E+ G S +APE LNC+APDTGNME + +GTE Q+ Sbjct: 60 GLWNLFLSA-ESGLTNLEYAPLAEMTGWSMEIAPEALNCAAPDTGNMEILHMFGTEQQRA 118 Query: 117 RWLKPLLAGEIRSSFAMTEPDVASSDATNVASSIVRDGDDYVINGRKWYTTGATDPRCKI 176 +WL+PLL G+IRS+F+MTEP VASSDA N+ ++I RDG DYVINGRKW+T+GA DPRCKI Sbjct: 119 QWLRPLLDGKIRSAFSMTEPAVASSDARNIETTISRDGADYVINGRKWWTSGAADPRCKI 178 Query: 177 IIFMGQTDPDNPDRHKRQSMILVPKETLGVHVVRSLPVLGFYGVPDRA--SEVIFTNVRV 234 +I MG+T+PD H++QSM+LVP +T GV +VRS PV G+ DR E+ + NVRV Sbjct: 179 LIVMGRTNPDAA-AHQQQSMVLVPIDTPGVTIVRSTPVFGWQ---DRHGHCEIDYHNVRV 234 Query: 235 PAANMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLSERVLERMCRRALKRVAFGKPLAEQT 294 PA N+L EG GF IAQ RLGPGRIHHCMR +G +ER L M R RVAFG+PLAEQ Sbjct: 235 PATNLLGEEGSGFAIAQARLGPGRIHHCMRALGAAERALALMVNRVRNRVAFGRPLAEQG 294 Query: 295 VTLERVAEARMKIDQARLLTLRAAYMMDTVGNKAARQEIAMIKVVAPNMAQTIVDWAIQA 354 V + +A++R +IDQARLL +AA+ +D GNK AR +AMIK VAP +A ++D AIQ Sbjct: 295 VVQQAIAQSRNEIDQARLLCEKAAWTIDQHGNKEARHLVAMIKAVAPRVACDVIDRAIQV 354 Query: 355 FGGGGTNNDHFLSAALATTRLLRLADGPDEVHRNQIGKLELRR 397 G G ++D L+ R +R+ DGPDEVH I + EL R Sbjct: 355 HGAAGVSDDTPLARLYGWHRAMRIFDGPDEVHLRSIARAELSR 397