BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0073.0012.p         (199 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L0150 [K] COG2188 Transcriptional regulators Lla Lactococcus lactis    71   2e-12
SPy2099 [K] COG2188 Transcriptional regulators Spy Streptococcus...    71   2e-12
SP1885 [K] COG2188 Transcriptional regulators Spn Streptococcus ...    66   4e-11

>L0150 [K] COG2188 Transcriptional regulators Lla Lactococcus lactis
          Length = 238

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 12  RYRDIATGLQKDIRLGTYAVGNLLPTETELMASYQASRQTVREALRILIDQGLIVRRAGL 71
           +Y  I   L+K I    Y   ++LP+E EL A+Y++SR TVR+AL+IL ++GLI RR G 
Sbjct: 3   KYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGY 62

Query: 72  GSVVIASEP---PVLFTHSVKSLGEWLRYSNETYREVVASSDIVADRKLAGLLKCEPGKS 128
           GS+V+A +    P+    S K L   + + +ET  EV+    +  + KL+       G+ 
Sbjct: 63  GSIVLAHDRLLFPISGLTSYKELQTSMGFHSET--EVIRFERLEINPKLSETTGFAVGEH 120

Query: 129 WFLIEAVRRSDQFAAPLGWAEIYVLRRFADVVTRSDHGRTPVHEQIA 175
              I   R+ D   + L W     L ++++       G TP H +I+
Sbjct: 121 AISILRRRKVDGKFSILDWD--LFLEKYSE-------GLTPEHAKIS 158


>SPy2099 [K] COG2188 Transcriptional regulators Spy Streptococcus pyogenes
           M1 GAS
          Length = 237

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 5/109 (4%)

Query: 13  YRDIATGLQKDIRLGTYAVGNLLPTETELMASYQASRQTVREALRILIDQGLIVRRAGLG 72
           Y+D+ T + KD     Y  G+ LPTE EL   YQASR TVR+AL +L   GLI+++ G G
Sbjct: 8   YKDLETKINKDF----YKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRG 63

Query: 73  SVVIASEPPVLFTHSVKSLGEWLRYSN-ETYREVVASSDIVADRKLAGL 120
           + VI     +     + S  E + YSN ++   V+A   ++ D  L+ L
Sbjct: 64  TQVIRHHQIMFPISELTSYQELVSYSNLDSKTNVIAIDKLIVDETLSKL 112


>SP1885 [K] COG2188 Transcriptional regulators Spn Streptococcus pneumoniae
           TIGR4
          Length = 236

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 5/108 (4%)

Query: 12  RYRDIATGLQKDIRLGTYAVGNLLPTETELMASYQASRQTVREALRILIDQGLIVRRAGL 71
           +Y+ +   +Q+ I+  TYAVG+ LP+E +LM  YQ SR TVR+AL +L ++GLI +  G 
Sbjct: 3   KYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQ 62

Query: 72  GSVVIASEP---PVLFTHSVKSLGEWLRYSNETYREVVASSDIVADRK 116
           GS V+  E    PV    S + L + L   ++T   VV+   I+ D+K
Sbjct: 63  GSQVVKEETVNFPVSNLTSYQELVKELGLRSKT--NVVSLDKIIIDKK 108