BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0073.0005.p         (81 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_rnh [L] COG0164 Ribonuclease HII Bsu Bacillus subtilis              64   6e-11
Rv2902c [L] COG0164 Ribonuclease HII Mtu Mycobacterium tuberculo...    62   4e-10
MT2970 [L] COG0164 Ribonuclease HII MtC Mycobacterium tuberculos...    62   4e-10
RSc1418 [L] COG0164 Ribonuclease HII Rso Ralstonia solanacearum        61   7e-10
XF1041 [L] COG0164 Ribonuclease HII Xfa Xylella fastidiosa 9a5c        59   2e-09

>BS_rnh [L] COG0164 Ribonuclease HII Bsu Bacillus subtilis
          Length = 255

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 36/54 (66%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPVVAAR 54
           VTRDR+M A A   P YGFE++KGY   EHLEAL   GP+  HR  FAPV + R
Sbjct: 202 VTRDRMMSAYAETYPMYGFEKNKGYGTKEHLEALAAYGPTELHRKTFAPVQSFR 255


>Rv2902c [L] COG0164 Ribonuclease HII Mtu Mycobacterium tuberculosis H37Rv
          Length = 264

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 33/50 (66%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPV 50
           V+RDR+M AL  D PGYGF +HKGY+ P H  AL RLGP   HR  F  V
Sbjct: 166 VSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINV 215


>MT2970 [L] COG0164 Ribonuclease HII MtC Mycobacterium tuberculosis CDC1551
          Length = 264

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 33/50 (66%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPV 50
           V+RDR+M AL  D PGYGF +HKGY+ P H  AL RLGP   HR  F  V
Sbjct: 166 VSRDRVMVALDADHPGYGFAEHKGYSTPAHSRALARLGPCPQHRYSFINV 215


>RSc1418 [L] COG0164 Ribonuclease HII Rso Ralstonia solanacearum
          Length = 236

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPV 50
           VTRDR + AL +  P YGF+ H GY  P+HL A++R G + HHR  FAPV
Sbjct: 161 VTRDRQLAALHIAFPQYGFDVHAGYGTPQHLAAIERHGVTPHHRRSFAPV 210


>XF1041 [L] COG0164 Ribonuclease HII Xfa Xylella fastidiosa 9a5c
          Length = 234

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 31/50 (62%)

Query: 1   VTRDRLMCALALDCPGYGFEQHKGYAVPEHLEALDRLGPSSHHRSFFAPV 50
           VTRDR M  L L  P YGF++HKGY  P HL AL   GP   HR  FAPV
Sbjct: 149 VTRDRHMVELHLQYPHYGFDKHKGYGTPAHLAALAEHGPCLEHRRSFAPV 198