BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0157.p (259 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3430 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 281 7e-76 CC1201 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 273 2e-73 RSc0806 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related... 209 7e-54 SPBC1289.14 [G] COG0235 Ribulose-5-phosphate 4-epimerase and rel... 147 3e-35 RC0678 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related ... 144 2e-34 >PA3430 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Pae Pseudomonas aeruginosa Length = 259 Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 139/260 (53%), Positives = 179/260 (68%), Gaps = 2/260 (0%) Query: 1 MSPAEARLKEVPSDMSAAEWEQRINLAACYRLVALYGWDDLVDTHISARVPGPEHHFLIN 60 M+ + +V + +SAAEW+ R++LAACYRLVAL+GWDDL+ THISA+VPG E FLIN Sbjct: 1 MTAVHSLPADVQAQVSAAEWQTRVDLAACYRLVALHGWDDLIFTHISAKVPGTED-FLIN 59 Query: 61 PYGLMFDEITASSLVKVDLDGNQLSKSDYSINPAGFTIHSAIHEVREDAGCVLHLHTVDG 120 P+GLMF EITASSLVKVD G +L S Y INPAG+TIHSA+HEVR D CVLH HT G Sbjct: 60 PFGLMFHEITASSLVKVDASGKKLMDSPYEINPAGYTIHSAVHEVRHDVECVLHTHTAAG 119 Query: 121 TAVSSGPEGLLPLNQTAQLVTHDLAYHDYEGIALDHDERPRLQRDLGGKNHMLLRNHGTL 180 AVS +GLLPL+Q + V L+YH YEG+AL+H+E+ RLQ DLG N ++L NHG L Sbjct: 120 IAVSCQKQGLLPLSQQSLFVLSSLSYHAYEGVALNHEEKARLQADLGASNFLILPNHGLL 179 Query: 181 TVGRSVASAFERMYHLERACSMQVATRALGPIAYPVDQHAIDKNTELLSNPDRAEL-RST 239 T G S+A F M+ L+RAC +QV ++ G + + ++++ R++ Sbjct: 180 TCGGSIADTFLMMFTLQRACEVQVMAQSGGAELIHIPGQILAGARDMIAGVMRSKTGMGG 239 Query: 240 QLVWPPLLRKLDRVNPGYRD 259 QL WP LLRKLD+ NPGYR Sbjct: 240 QLAWPALLRKLDQQNPGYRQ 259 >CC1201 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Ccr Caulobacter vibrioides Length = 300 Score = 273 bits (699), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 138/245 (56%), Positives = 171/245 (69%), Gaps = 2/245 (0%) Query: 15 MSAAEWEQRINLAACYRLVALYGWDDLVDTHISARVPGPEHHFLINPYGLMFDEITASSL 74 +S AEW+ R++LAA YRLVAL+GWDD++ THISAR+PGPEHHFLINPYG+ F EITASSL Sbjct: 58 VSEAEWQARVDLAALYRLVALHGWDDMIFTHISARIPGPEHHFLINPYGMFFGEITASSL 117 Query: 75 VKVDLDGNQLSKSDYSINPAGFTIHSAIHEVREDAGCVLHLHTVDGTAVSSGPEGLLPLN 134 VKVDL+GN + K+ Y INPAGFTIHSA+H REDA V+HLH+ G AVS+ EGLLPL Sbjct: 118 VKVDLEGNVIDKTPYYINPAGFTIHSAVHAAREDAHYVMHLHSDQGVAVSAHKEGLLPLT 177 Query: 135 QTAQLVTHDLAYHDYEGIALDHDERPRLQRDLGGKNHMLLRNHGTLTVGRSVASAFERMY 194 Q + +V LAYHDYEGIAL+ +ER R+ DLG K ++LRNHGTL+VG + A + M+ Sbjct: 178 QHSLIVLPQLAYHDYEGIALNLEERERIVADLGQKKLLMLRNHGTLSVGATAAECWLGMF 237 Query: 195 HLERACSMQVATRALGPIAYPVDQHAIDKNTELLSNPDRAELRSTQLVWPPLLRKLDRVN 254 LERAC+ QV ++G + A E+ L WP LRKLDR + Sbjct: 238 FLERACAQQVMALSIGRDNVLLAPEA--AQDEVRKQIGMGMGMIGGLAWPGCLRKLDRES 295 Query: 255 PGYRD 259 PGY D Sbjct: 296 PGYAD 300 >RSc0806 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Rso Ralstonia solanacearum Length = 261 Score = 209 bits (531), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/250 (50%), Positives = 154/250 (61%), Gaps = 9/250 (3%) Query: 15 MSAAEWEQRINLAACYRLVALYGWDDLVDTHISARVPGPEHHFLINPYGLMFDEITASSL 74 +S AE RI+LAA YRL AL GWDDL+ TH+SA VPG HFLIN +GL FDEITASSL Sbjct: 16 ISEAERAVRIDLAAAYRLAALNGWDDLIYTHLSATVPGEPEHFLINAFGLAFDEITASSL 75 Query: 75 VKVDLDGNQLS-----KSDYSINPAGFTIHSAIHEVREDAGCVLHLHTVDGTAVSSGPEG 129 VK++ G + + S+N GF +H+A+H R DA CV+HLH G AVS+ G Sbjct: 76 VKINRAGQLVGDWPDPAACPSVNVTGFALHAAVHAARPDAHCVIHLHNTAGIAVSAQQHG 135 Query: 130 LLPLNQTAQLVTHDLAYHDYEGIALDHDERPRLQRDLGGKNHMLLRNHGTLTVGRSVASA 189 LLPL+Q A LAYHDYEG+A +E RL LGG MLLRNHGTLTVGR+VA A Sbjct: 136 LLPLSQHALRFHRRLAYHDYEGLAFTQEEGARLTASLGGHRAMLLRNHGTLTVGRTVAEA 195 Query: 190 FERMYHLERACSMQVATRALGPIAYPVDQHAIDKNTELLSNPDRAELRSTQLVWPPLLRK 249 M L +AC +Q+ G + P + A D+ E L + E L WP LLRK Sbjct: 196 HVLMATLIKACEIQIQALTAGAVITPAPRVA-DRAAEQLEDGGAIE---GMLEWPALLRK 251 Query: 250 LDRVNPGYRD 259 LDR+N YRD Sbjct: 252 LDRMNRSYRD 261 >SPBC1289.14 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Spo Schizosaccharomyces pombe Length = 324 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 116/210 (55%), Gaps = 9/210 (4%) Query: 9 KEVPSDMSAAEWEQRINLAACYRLVALYGWDDLVDTHISARVPGPE--HHFLINPYGLMF 66 K + + E RI LAA YRL L W++ + H++A+V P+ FLINPYGL + Sbjct: 65 KSCLHEFTDEEVATRIELAAAYRLFGLEHWNENILNHLTAKVEEPDGTASFLINPYGLRY 124 Query: 67 DEITASSLVKVDLDGN----QLSKSDYSINPAGFTIHSAIHEVREDAGCVLHLHTVDGTA 122 EITASSL+KVD DGN ++ + IN AG+ IHSAIH R D ++H H Sbjct: 125 GEITASSLIKVDEDGNIKHPGVTGDVFGINRAGYVIHSAIHRARPDVKSIMHNHYPYAAG 184 Query: 123 VSSGPEGLLPLNQTAQLVTHDLAYHDYEGIALDHDERPRLQRDLGGKNHMLLRNHGTLTV 182 VS G L L QT+ + + YHDY GI +D E+ L D+ K+ ++LRNHG +T Sbjct: 185 VSCVKHGFLELAQTSHQ-SGPVTYHDYHGIVVDKGEQKSLAEDIANKDILILRNHGIITA 243 Query: 183 GRSVASAFERMYHLERACSMQV--ATRALG 210 SV +A+ MY A +Q + ALG Sbjct: 244 AESVGAAYYLMYQFLAATEIQTHASANALG 273 >RC0678 [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases Rco Rickettsia conorii Length = 231 Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/183 (41%), Positives = 106/183 (57%), Gaps = 2/183 (1%) Query: 23 RINLAACYRLVALYGWDDLVDTHISARVPGPEHHFLINPYGLMFDEITASSLVKVDLDGN 82 + NLAA YR++A DD TH+SAR P + I P+GL F+E+T +L+KV LDG Sbjct: 4 KYNLAAAYRIMAYLSLDDHTYTHLSAR-PKNAVFYYIYPFGLRFEEVTTENLLKVSLDGQ 62 Query: 83 QLSKSDYSINPAGFTIHSAIHEVREDAGCVLHLHTVDGTAVSSGPEGLLPLNQTAQLVTH 142 L +Y N G+ IH +I++ R D + H HT AVS+ GLLP++Q A Sbjct: 63 ILEGEEYQYNKTGYFIHGSIYKTRPDISAIFHYHTPAAIAVSALKCGLLPISQWALHFYD 122 Query: 143 DLAYHDYEGIALDHDER-PRLQRDLGGKNHMLLRNHGTLTVGRSVASAFERMYHLERACS 201 ++YH+Y + LD D++ RL DL MLLRNHG +T G+++ A YHLE+AC Sbjct: 123 RISYHNYNSLVLDADKQSSRLVTDLKQNYVMLLRNHGAITCGKTIHEAMFYTYHLEQACK 182 Query: 202 MQV 204 Q Sbjct: 183 TQC 185