BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0117.p (308 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF0225 [E] COG4177 ABC-type branched-chain amino acid transport ... 115 1e-25 BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid trans... 97 6e-20 SMc03117 [E] COG4177 ABC-type branched-chain amino acid transpor... 94 4e-19 mll4887 Non COG 90 5e-18 RSp0015 [E] COG4177 ABC-type branched-chain amino acid transport... 90 7e-18 >AF0225 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 338 Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 141/256 (55%), Gaps = 5/256 (1%) Query: 19 VAATLPFYVSGYILGLLTVAFYFGVFAMAWDLLFGFAGEVNFGPTFLIGTGAYTAGILNN 78 VAA +PF + L +L +A+ F + ++WDL+ G+ G+VN G T +G GAY A IL Sbjct: 40 VAAVMPFILPEAYLYILGLAYIFAIMVISWDLMVGYTGQVNLGHTTFVGLGAYVAAILQT 99 Query: 79 --QFGWSVY--VCILLGALASVVAGFVLALPALRVRGPYFGLTTLVAVLMLQNFVVVFAD 134 + G S++ + I+ G + + G + + LR+RG YF L T + L+ V ++ + Sbjct: 100 PIRAGLSLHPALAIITGGVVAAGVGLSIGIITLRLRGYYFSLVTAILPLVFMQTVFIWRE 159 Query: 135 LTGGEIGLTIPDVITINAGANYWIALGFMTVSAAILYGLSQSPVGLVLQASGQDPVQAGA 194 L GGE G I + + Y+ +L + VS ++ + S +GL A A + Sbjct: 160 LFGGEEGFAIENTMLTTTVEKYYFSLAVLVVSLVVMKKVVDSRIGLRFMALRDSEELAES 219 Query: 195 LGFNIVKHKLAAFIVSAFFSGLSGALLVFYFGTASVGTVVDVAVGVNVIVSAVLGGRRTV 254 LG N K+K+ AF +S+FF+G++GA++V Y T S + V + + +I+SAVLGG T+ Sbjct: 220 LGINATKYKVLAFALSSFFAGIAGAMVVNYRVTVS-PELYGVPLMLLIILSAVLGGLGTL 278 Query: 255 LGAALGAIFLIVAGEF 270 G GAI + +A + Sbjct: 279 YGPLAGAIVIYLAKNW 294 >BMEII0874_2 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Bme Brucella melitensis Length = 315 Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/279 (28%), Positives = 136/279 (48%), Gaps = 13/279 (4%) Query: 41 FGVFAMAWDLLFGFAGEVNFGPTFLIGTGAYTAGILNNQFGWSVYVCILLGALASVVAGF 100 F + AW+++ GFAG+++ G G G YT IL N G S + + +GA + + G Sbjct: 30 FAALSTAWNIVGGFAGQMSLGHAVFYGIGGYTGVILFNM-GISPWFSMFIGAFIAALVGM 88 Query: 101 VLALPALRVRGPYFGLTTLVAVLMLQNFVVVFADLTGGEIGLTIP------DVITINAGA 154 V++ P R++GP++ L ++ + + + + F LTGG GL I ++ Sbjct: 89 VISYPCFRLKGPFYSLASIAFLEVFRVLALHFGWLTGGATGLMIQLKLGWVWMVFRERWP 148 Query: 155 NYWIALGFMTVSAAILYGLSQSPVGLVLQASGQDPVQAGALGFNIVKHKLAAFIVSAFFS 214 + I G + V+ AI + + +S +G L A+ + A A G V+ +L A +S+ Sbjct: 149 SLLIVFGMLLVTLAITWAVRRSRLGFYLVATRERESAARAAGVRTVRVRLIAVAISSALC 208 Query: 215 GLSGALLVFYFGTASVGTVVDVAVGVNVIVSAVLGGRRTVLGAALGAIFLIVAGEFLRPT 274 + G Y + +A + + + A++GG TV G LGA+ L+ E+ R + Sbjct: 209 AMLGTFHAMYLTFIEPAAMFSLAFSIQIAMFALIGGLGTVAGPLLGAVLLVPITEWARAS 268 Query: 275 -GE----LATFIVSAVALLVVLFFPGGFLGAALSREARS 308 G L F+ V +LVVLF P G +G A++R R Sbjct: 269 LGASALGLHGFVYGLVLILVVLFMPNGIMG-AINRFVRK 306 >SMc03117 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 330 Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 83/269 (30%), Positives = 139/269 (51%), Gaps = 13/269 (4%) Query: 41 FGVFAMAWDLLFGFAGEVNFGPTFLIGTGAYTAGILNNQFGWSVYVCILLGALASVVAGF 100 F +FA A++LL G+ G ++FG G AY ++G + ILLG + + + G Sbjct: 48 FALFACAFNLLLGYTGLLSFGHAAFFGGAAYFTAHAVKEWGVPPELGILLGVVGAALLGA 107 Query: 101 VLALPALRVRGPYFGLTTLVAVLMLQNFVVVFADLTGGEIGL-TIPD-----VITINAGA 154 V+ A+R +G YF + TL M F + A T GE G+ ++P I ++ Sbjct: 108 VVGFFAIRRQGIYFAMITLALAQMFYFFCLQ-AGFTRGEDGIQSVPRGHLLGFIDLSQPT 166 Query: 155 N-YWIALGFMTVSAAILYGLSQSPVGLVLQASGQDPVQAGALGFNIVKHKLAAFIVSAFF 213 N Y+ L + A+++ + SP G++L++ ++ +A +LG+++ +KLAAF++SA Sbjct: 167 NMYYFVLAVFVIGIAMIWRIINSPFGMILKSIRENETRAISLGYSVRNYKLAAFVMSAAL 226 Query: 214 SGLSGAL--LVFYFGTASVGTVVDVAVGVNVIVSAVLGGRRTVLGAALGAIFLIVAGEFL 271 +GL+G L LVF F T T V + VI+ +LGG T++G GA ++ +L Sbjct: 227 TGLAGGLKALVFQFATL---TDVSWQMSGEVILMTLLGGIGTLIGPLFGAGLVVTLQNYL 283 Query: 272 RPTGELATFIVSAVALLVVLFFPGGFLGA 300 + T I V ++ VL F G +G Sbjct: 284 ATSEFPVTIITGIVFMVCVLLFRRGIVGE 312 >mll4887 Non COG Length = 320 Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 140/315 (44%), Gaps = 12/315 (3%) Query: 1 MASFFSSRLFFISLVCVAVAATLPFYVSGYILGLLTVAFYFGVFAMAWDLLFGFAGEVNF 60 M+ ++ + + L +A+ L F + Y GLL VFAM +++LFG+ G ++ Sbjct: 1 MSEASPAKAYALHLGVIALLFVLSFVLPEYYHGLLARIMVLAVFAMGYNMLFGYVGLLSL 60 Query: 61 GPTFLIGTGAYTAGILNNQFGWSVYVCILLGALASVVAGFVLALPALRVRGPYFGLTTLV 120 G G G Y AG+ Q GW V + L G + V V+ L ALR G F + T++ Sbjct: 61 GHAMFFGAGLYGAGLAIIQLGWGVPLAFLGGIASGAVLALVIGLLALRATGVAFMIVTMM 120 Query: 121 AVLMLQNFVVVFADLTGGEIGLTIPD-VITINAGA----------NYWIALGFMTVSAAI 169 + ++ FA TGG+ G +P +N GA Y AL ++ + Sbjct: 121 FAQVFYLLILYFAAWTGGDQGQVVPQPARALNLGATSLDLTNPTVRYMSALVLFSLVLLL 180 Query: 170 LYGLSQSPVGLVLQASGQDPVQAGALGFNIVKHKLAAFIVSAFFSGLSGALLVFYFGTAS 229 + +S G VL A ++ + LG++ +KL A +VS SGA FG Sbjct: 181 TLAVVRSRYGRVLVAIRENEERTKMLGYDTFSNKLIAVVVSGTICAASGAAYALLFGYVG 240 Query: 230 VGTVVDVAVGVNVIVSAVLGGRRTVLGAALGAIFLIVAGEFLRPTGELATFIVSAVALLV 289 + V + ++ +LGG T LG +G +F+ + IV +L+ Sbjct: 241 -SSFASVQYSILPLLWVLLGGAATTLGPLIGTVFMYYVIDVSSGYTSAYLLIVGIALILL 299 Query: 290 VLFFPGGFLGAALSR 304 VLFFP G LG+ R Sbjct: 300 VLFFPKGILGSIRQR 314 >RSp0015 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Rso Ralstonia solanacearum Length = 299 Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 16/246 (6%) Query: 66 IGTGAYTAGILNNQFGWSVYVCILLGALASVVAGFVLALPALRVRGPYFGLTTLVAVLML 125 +G GAYT+ +L V +L G LA V ++ P LR+ G Y + TL ++ Sbjct: 45 MGIGAYTSALLTMNAEMPFPVALLGGMLAPAVVAVIIGRPTLRLSGVYLAMATLGFGEVV 104 Query: 126 QNFVVVFADLTGGEIGLT-IPDVITINAGANYWIALGFMTVSAAILYGLSQSPVGLVLQA 184 + ++ TGG +GL IP + +W + ++ +L L +S VG +A Sbjct: 105 RVLILNTESWTGGALGLNGIPQL------TEWWHVALAVALTLFVLARLRRSKVGRAFEA 158 Query: 185 SGQDPVQAGALGFNIVKHKLAAFIVSAFFSGLSGAL---LVFYFGTASVGTVVDVAVGVN 241 +D AG +G N+ KL AF++ A +GL+GAL L F+ G A G GV Sbjct: 159 IKEDETAAGLMGINVAGTKLLAFVLGAMIAGLAGALNAHLTFFIGPAEFG----FDRGVE 214 Query: 242 VIVSAVLGGRRTVLGAALGAIFLIVAGEFLRPTGELATFIVSAVALLVVLFFPGGFLGAA 301 ++ A+LGG + G LG++ L + E LR + + + +L+VLF P G A Sbjct: 215 ILTMAILGGTNGLTGPVLGSVILSLLPELLRAFKDFRLVVNGLILMLIVLFLPKGIWDPA 274 Query: 302 LSREAR 307 R AR Sbjct: 275 --RFAR 278