BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0116.p (492 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 195 3e-49 DR1034 [E] COG0410 ABC-type branched-chain amino acid transport ... 192 1e-48 YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport... 190 6e-48 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 189 1e-47 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 189 1e-47 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 195 bits (495), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 103/213 (48%), Positives = 143/213 (67%), Gaps = 2/213 (0%) Query: 264 LLQVENVSVHYGKAQALENVSIHVHEGEFVSVVGLNGAGKTTLFNTISGF-LPYTGDILR 322 +L E VS HYGK QAL +VS+H+++GE V+++G NGAGKTTL T+ G +G ++ Sbjct: 5 MLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRASSGRVVF 64 Query: 323 GGQPLRGTGPAKIARSGLVQCPESRELFGEMTVRENLDLGGQHLDDAARARQLAWLFELF 382 G+ + AKI R + PE R +F MTV ENL +GG + ++ W++ELF Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDRFQERIKWVYELF 124 Query: 383 PILKERQGQMAQTLSGGEQQMLAIGRALMMQPQILILDEPTLGLAPVILELLSKALEKLR 442 P L ER+ Q A T+SGGEQQMLAIGRALM QP++L+LDEP+LGLAP+I++ + +E+LR Sbjct: 125 PRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 184 Query: 443 QTTKITVLLGEQNVTFALPHADRVYVLEHARIV 475 + +T+ L EQN AL ADR YVLE+ +V Sbjct: 185 E-QGMTIFLVEQNANQALKLADRGYVLENGHVV 216 Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 121/238 (50%), Gaps = 7/238 (2%) Query: 10 LTVRGLTKRFGGLTAVKNLSFDLHPGEILGLIGPNGSGKSTAMKSVMGIERPTAGEVLFE 69 LT ++ +G + A+ ++S ++ GEI+ LIG NG+GK+T + ++ G R ++G V+F+ Sbjct: 6 LTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRASSGRVVFD 65 Query: 70 GENVAGLPAHKIARKGFGMVFQHSRPLNRQTVLENIMVALLPDSLFMLFPDKALTERAKW 129 G+++ KI R+ +V + R +R TV EN+ + F D+ ER KW Sbjct: 66 GKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG-----GFFAERDR-FQERIKW 119 Query: 130 IAERV-GLGAVMDRRPPTLPFADLRRLELAKAIARDPKVVLVDEPFAGLTSAEVGTFSAL 188 + E L +R T+ + + L + +A+ P+++L+DEP GL + Sbjct: 120 VYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT 179 Query: 189 IRSFRDEGRAVMLVDHNVKSVAALVDRVLAMYLGEEITTGRAEDVMKNETVRRVYLGG 246 I R++G + LV+ N L DR + G + + + ++ NE VR YLGG Sbjct: 180 IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLGG 237 >DR1034 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 252 Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/219 (45%), Positives = 149/219 (68%), Gaps = 2/219 (0%) Query: 263 PLLQVENVSVHYGKAQALENVSIHVHEGEFVSVVGLNGAGKTTLFNTISGFL-PYTGDIL 321 P+L+++NV +YG+ +AL+ +++ V+EGE V+++G NGAGKTT TISG + P TG + Sbjct: 16 PVLELQNVHSYYGQIEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKPKTGSVT 75 Query: 322 RGGQPLRGTGPAKIARSGLVQCPESRELFGEMTVRENLDLGGQHLDD-AARARQLAWLFE 380 GQ + G ++ G+ PE R +F +MTVRENL++G ++D AA ++ FE Sbjct: 76 YLGQNVTGVPSHQLIGRGMAHVPEGRRIFPQMTVRENLEVGAYTVNDKAAINARIEEGFE 135 Query: 381 LFPILKERQGQMAQTLSGGEQQMLAIGRALMMQPQILILDEPTLGLAPVILELLSKALEK 440 LFP L+ER+ Q+ T+SGGEQQMLAI RALM+ P++L+LDEP++GL+P+ +E + +E+ Sbjct: 136 LFPRLRERESQLGGTMSGGEQQMLAIARALMIAPKVLLLDEPSMGLSPLFVENIFSIIER 195 Query: 441 LRQTTKITVLLGEQNVTFALPHADRVYVLEHARIVWEGD 479 L + T+LL EQN + AL ADR YVL+ I G+ Sbjct: 196 LNKERGTTILLVEQNASMALAIADRAYVLQTGEIKLSGN 234 Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 27/251 (10%) Query: 7 TATLTVRGLTKRFGGLTAVKNLSFDLHPGEILGLIGPNGSGKSTAMKSVMGIERPTAGEV 66 T L ++ + +G + A+K L+ ++ GEI+ LIG NG+GK+T ++++ G+ +P G V Sbjct: 15 TPVLELQNVHSYYGQIEALKGLNMTVNEGEIVALIGGNGAGKTTTLRTISGMMKPKTGSV 74 Query: 67 LFEGENVAGLPAHKIARKGFGMVFQHSRPLNRQTVLENIMVALLP-----------DSLF 115 + G+NV G+P+H++ +G V + R + TV EN+ V + F Sbjct: 75 TYLGQNVTGVPSHQLIGRGMAHVPEGRRIFPQMTVRENLEVGAYTVNDKAAINARIEEGF 134 Query: 116 MLFPDKALTERAKWIAERVGLGAVMDRRPPTLPFADLRRLELAKAIARDPKVVLVDEPFA 175 LFP L ER + T+ + + L +A+A+ PKV+L+DEP Sbjct: 135 ELFPR--LRERESQLG-------------GTMSGGEQQMLAIARALMIAPKVLLLDEPSM 179 Query: 176 GLTSAEV-GTFSALIRSFRDEGRAVMLVDHNVKSVAALVDRVLAMYLGEEITTGRAEDVM 234 GL+ V FS + R ++ G ++LV+ N A+ DR + GE +G A+D+ Sbjct: 180 GLSPLFVENIFSIIERLNKERGTTILLVEQNASMALAIADRAYVLQTGEIKLSGNAQDIA 239 Query: 235 KNETVRRVYLG 245 ++ETVR+ YLG Sbjct: 240 RDETVRKAYLG 250 >YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ype Yersinia pestis Length = 233 Score = 190 bits (483), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 105/215 (48%), Positives = 142/215 (66%), Gaps = 2/215 (0%) Query: 264 LLQVENVSVHYGKAQALENVSIHVHEGEFVSVVGLNGAGKTTLFNTISGFLPYT-GDILR 322 +L VS HYGK QAL VS+H+ +GE V+++G NGAGKTTL T+ G T G+I+ Sbjct: 1 MLSFNQVSAHYGKIQALHQVSLHIQQGEIVTLIGANGAGKTTLLGTLCGEPRATEGNIVF 60 Query: 323 GGQPLRGTGPAKIARSGLVQCPESRELFGEMTVRENLDLGGQHLDDAARARQLAWLFELF 382 G Q + A+I R + PE R +F MTV ENL +GG D +++ +++LF Sbjct: 61 GEQDITHWQTARIMREAIAIVPEGRRVFSRMTVEENLAMGGFFADRQQYQQRIERVYDLF 120 Query: 383 PILKERQGQMAQTLSGGEQQMLAIGRALMMQPQILILDEPTLGLAPVILELLSKALEKLR 442 P L ER+ Q A T+SGGEQQMLAIGRALM QP++L+LDEP+LGLAP+I+ + +++LR Sbjct: 121 PRLFERRIQRAGTMSGGEQQMLAIGRALMSQPKLLLLDEPSLGLAPIIILQIFDTIQQLR 180 Query: 443 QTTKITVLLGEQNVTFALPHADRVYVLEHARIVWE 477 + +T+ L EQN AL ADR YVLE+ RIV E Sbjct: 181 E-EGMTIFLVEQNANQALKLADRGYVLENGRIVLE 214 Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 25/247 (10%) Query: 10 LTVRGLTKRFGGLTAVKNLSFDLHPGEILGLIGPNGSGKSTAMKSVMGIERPTAGEVLFE 69 L+ ++ +G + A+ +S + GEI+ LIG NG+GK+T + ++ G R T G ++F Sbjct: 2 LSFNQVSAHYGKIQALHQVSLHIQQGEIVTLIGANGAGKTTLLGTLCGEPRATEGNIVFG 61 Query: 70 GENVAGLPAHKIARKGFGMVFQHSRPLNRQTVLENI-MVALLPDS---------LFMLFP 119 +++ +I R+ +V + R +R TV EN+ M D ++ LFP Sbjct: 62 EQDITHWQTARIMREAIAIVPEGRRVFSRMTVEENLAMGGFFADRQQYQQRIERVYDLFP 121 Query: 120 DKALTERAKWIAERVGLGAVMDRRPPTLPFADLRRLELAKAIARDPKVVLVDEPFAGLTS 179 L ER R+ +R T+ + + L + +A+ PK++L+DEP GL Sbjct: 122 R--LFER------RI-------QRAGTMSGGEQQMLAIGRALMSQPKLLLLDEPSLGLAP 166 Query: 180 AEVGTFSALIRSFRDEGRAVMLVDHNVKSVAALVDRVLAMYLGEEITTGRAEDVMKNETV 239 + I+ R+EG + LV+ N L DR + G + ++ NE V Sbjct: 167 IIILQIFDTIQQLREEGMTIFLVEQNANQALKLADRGYVLENGRIVLEDTGAALLANEAV 226 Query: 240 RRVYLGG 246 R YLGG Sbjct: 227 RSAYLGG 233 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/213 (47%), Positives = 140/213 (65%), Gaps = 2/213 (0%) Query: 264 LLQVENVSVHYGKAQALENVSIHVHEGEFVSVVGLNGAGKTTLFNTISGFLPYT-GDILR 322 +L + VS HYGK QAL VS+H+++GE V+++G NGAGKTTL T+ G T G I+ Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 323 GGQPLRGTGPAKIARSGLVQCPESRELFGEMTVRENLDLGGQHLDDAARARQLAWLFELF 382 + + AKI R + PE R +F MTV ENL +GG + ++ W++ELF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 383 PILKERQGQMAQTLSGGEQQMLAIGRALMMQPQILILDEPTLGLAPVILELLSKALEKLR 442 P L ER+ Q A T+SGGEQQMLAIGRALM P++L+LDEP+LGLAP+I++ + +E+LR Sbjct: 129 PRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 443 QTTKITVLLGEQNVTFALPHADRVYVLEHARIV 475 + +T+ L EQN AL ADR YVLE+ +V Sbjct: 189 E-QGMTIFLVEQNANQALKLADRGYVLENGHVV 220 Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 9/248 (3%) Query: 1 MDQTVTTATLTVRGLTKRFGGLTAVKNLSFDLHPGEILGLIGPNGSGKSTAMKSVMGIER 60 M + L+ ++ +G + A+ +S ++ GEI+ LIG NG+GK+T + ++ G R Sbjct: 1 MRHKMEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR 60 Query: 61 PTAGEVLFEGENVAGLPAHKIARKGFGMVFQHSRPLNRQTVLENIMVALLPDSLFMLFPD 120 T+G ++F+ +++ KI R+ +V + R +R TV EN+ ++ F + Sbjct: 61 ATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL-------AMGGFFAE 113 Query: 121 K-ALTERAKWIAERV-GLGAVMDRRPPTLPFADLRRLELAKAIARDPKVVLVDEPFAGLT 178 + ER KW+ E L +R T+ + + L + +A+ +P+++L+DEP GL Sbjct: 114 RDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLA 173 Query: 179 SAEVGTFSALIRSFRDEGRAVMLVDHNVKSVAALVDRVLAMYLGEEITTGRAEDVMKNET 238 + I R++G + LV+ N L DR + G + + + ++ NE Sbjct: 174 PIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEA 233 Query: 239 VRRVYLGG 246 VR YLGG Sbjct: 234 VRSAYLGG 241 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/213 (47%), Positives = 140/213 (65%), Gaps = 2/213 (0%) Query: 264 LLQVENVSVHYGKAQALENVSIHVHEGEFVSVVGLNGAGKTTLFNTISGFLPYT-GDILR 322 +L + VS HYGK QAL VS+H+++GE V+++G NGAGKTTL T+ G T G I+ Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 323 GGQPLRGTGPAKIARSGLVQCPESRELFGEMTVRENLDLGGQHLDDAARARQLAWLFELF 382 + + AKI R + PE R +F MTV ENL +GG + ++ W++ELF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 383 PILKERQGQMAQTLSGGEQQMLAIGRALMMQPQILILDEPTLGLAPVILELLSKALEKLR 442 P L ER+ Q A T+SGGEQQMLAIGRALM P++L+LDEP+LGLAP+I++ + +E+LR Sbjct: 129 PRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 443 QTTKITVLLGEQNVTFALPHADRVYVLEHARIV 475 + +T+ L EQN AL ADR YVLE+ +V Sbjct: 189 E-QGMTIFLVEQNANQALKLADRGYVLENGHVV 220 Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 9/248 (3%) Query: 1 MDQTVTTATLTVRGLTKRFGGLTAVKNLSFDLHPGEILGLIGPNGSGKSTAMKSVMGIER 60 M + L+ ++ +G + A+ +S ++ GEI+ LIG NG+GK+T + ++ G R Sbjct: 1 MRHKMEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR 60 Query: 61 PTAGEVLFEGENVAGLPAHKIARKGFGMVFQHSRPLNRQTVLENIMVALLPDSLFMLFPD 120 T+G ++F+ +++ KI R+ +V + R +R TV EN+ ++ F + Sbjct: 61 ATSGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL-------AMGGFFAE 113 Query: 121 K-ALTERAKWIAERV-GLGAVMDRRPPTLPFADLRRLELAKAIARDPKVVLVDEPFAGLT 178 + ER KW+ E L +R T+ + + L + +A+ +P+++L+DEP GL Sbjct: 114 RDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLA 173 Query: 179 SAEVGTFSALIRSFRDEGRAVMLVDHNVKSVAALVDRVLAMYLGEEITTGRAEDVMKNET 238 + I R++G + LV+ N L DR + G + + + ++ NE Sbjct: 174 PIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEA 233 Query: 239 VRRVYLGG 246 VR YLGG Sbjct: 234 VRSAYLGG 241