BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0072.0078.p         (239 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM1389 [QR] COG0500 SAM-dependent methyltransferases Tma Thermot...    73   7e-13
PA3171 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    72   7e-13
PM0840 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    71   2e-12
XF2471 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    68   2e-11
VC1257 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-...    67   3e-11

>TM1389 [QR] COG0500 SAM-dependent methyltransferases Tma Thermotoga
           maritima
          Length = 248

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 9/151 (5%)

Query: 14  RFHDEISSGWETLHQSRTFKARTAAMFGLLGNADLNGQRWLDAGCGTGTLSRLLAARGCD 73
            F+D I+  +++++++  +K     +   L     N  R LD G GTG  S  L  RG +
Sbjct: 7   EFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE 66

Query: 74  VTGVDASSEMIAAARGHLTDGTLAGRLTFQQIPTIASLPFPDRSFDGALC-ASVLEYVPD 132
           V  VD S EM+  AR       +  +           LPFP  +F+  L    VL YV +
Sbjct: 67  VVLVDPSKEMLEVAREKGVKNVVEAK--------AEDLPFPSGAFEAVLALGDVLSYVEN 118

Query: 133 VAQCLAEIHRVLRPRGLLLLSIPNRDSLLRR 163
             +  +EI RVL P GLL+ ++ N  + L++
Sbjct: 119 KDKAFSEIRRVLVPDGLLIATVDNFYTFLQQ 149


>PA3171 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Pae Pseudomonas aeruginosa
          Length = 232

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 46  ADLNGQRWLDAGCGTGTLSRLLAARGCDVTGVDASSEMIAAARGHLTDGTLAGRLTFQQI 105
           A L G++ LD GCG G LS  +A RG  VTG+D     +A AR H  +  +A  + ++QI
Sbjct: 44  AGLAGKKVLDIGCGGGILSEAMAQRGASVTGIDMGEAPLAVARLHQLESGVA--VDYRQI 101

Query: 106 PTIASLPFPDRSFDGALCASVLEYVPDVAQCLAEIHRVLRPRGLLLLSIPNRD 158
                       FD   C  +LE+VPD A  +   HR+++P G + LS  NR+
Sbjct: 102 TAEQMAEEMPGQFDVVTCLEMLEHVPDPASVIRACHRLVKPGGQVFLSTINRN 154


>PM0840 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Pmu Pasteurella multocida
          Length = 242

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 11/119 (9%)

Query: 48  LNGQRWLDAGCGTGTLSRLLAARGCDVTGVDASSEMIAAARGHLTDGTLAGRLTFQQIPT 107
           L G++ LD GCG G LS  +A +G  VTG+D SS  +  AR H  +  L   + +QQI  
Sbjct: 47  LTGKKVLDVGCGGGILSESMAKQGAIVTGIDMSSAPLQVARKHALESGL--HIDYQQITI 104

Query: 108 IASLPF---------PDRSFDGALCASVLEYVPDVAQCLAEIHRVLRPRGLLLLSIPNR 157
              L            D  FD   C  +LE+VPD +  +A   ++L+P G++  S  NR
Sbjct: 105 EEFLQNQTALFAERGEDEKFDVITCMEMLEHVPDPSSIIACCKQLLKPNGVIFFSTINR 163


>XF2471 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Xfa Xylella fastidiosa 9a5c
          Length = 246

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 48  LNGQRWLDAGCGTGTLSRLLAARGCDVTGVDASSEMIAAARGHLTDGTLAGRLTFQQIPT 107
           L+G R LD GCG G LS  LA +G  VT +D + E+I  AR H  +  +      Q I  
Sbjct: 54  LSGARVLDVGCGGGLLSEALARQGAHVTAIDLAPELIKVARLHGLESGIQVDYRIQAIED 113

Query: 108 -IASLPFPDRSFDGALCASVLEYVPDVAQCLAEIHRVLRPRGLLLLSIPNR 157
            +A  P P   FD   C  +LE+VPD A  +     +L+P G L +S  NR
Sbjct: 114 LLAEQPAP---FDAIACMEMLEHVPDPAAIVDACAHLLKPGGRLFVSTINR 161


>VC1257 [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,
           4-benzoquinol methylase Vch Vibrio cholerae
          Length = 245

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 3   TMGQTRERPEIRFHDEISSGW-------ETLHQSRTFKARTAAMFGLLGNADLNGQRWLD 55
           T  Q  +  EI+  ++++S W       + LHQ    +      + L     L G+R LD
Sbjct: 12  TATQNVDPNEIKKFEDMASRWWDLEGEFKPLHQINPLRLN----YVLEKANGLFGKRVLD 67

Query: 56  AGCGTGTLSRLLAARGCDVTGVDASSEMIAAARGH-LTDGTLAGRLTFQQIPTIASLPFP 114
            GCG G L+  +A  G  VTG+D   E +  AR H L  GT   +LT+ Q    A     
Sbjct: 68  VGCGGGILAESMAREGAQVTGLDMGKEPLEVARLHALETGT---KLTYIQSTVEAHAEAN 124

Query: 115 DRSFDGALCASVLEYVPDVAQCLAEIHRVLRPRGLLLLSIPNRD 158
             ++D   C  +LE+VPD    +    ++++P G +  S  NR+
Sbjct: 125 PHTYDVVTCMEMLEHVPDPLSVIQSCAKLVKPGGHVFFSTLNRN 168