BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0072.0055.p (250 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 168 8e-42 VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae 99 1e-20 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 92 2e-18 BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella me... 82 8e-16 AGc2620 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 80 5e-15 >SMb20773 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 228 Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 92/210 (43%), Positives = 132/210 (62%), Gaps = 3/210 (1%) Query: 15 PAAGNGSDRQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEMLGISRTPLREALKVL 74 P G G R+ A LH ++ LRD ++EG++P G R+ E QL E LG+SRTPLREA+K L Sbjct: 11 PIGGPGPIRRTA-LHDTLVSHLRDMIIEGDLPPGTRLHEGQLGEQLGVSRTPLREAIKYL 69 Query: 75 AAEGLIELLPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEIITDEEIAAIERLHYE 134 A+EGL+EL+P+RGA V+R S +D+ ++ V+ LE LAGRLACE TD EIA + LH E Sbjct: 70 ASEGLVELVPSRGAVVKRFSAKDVRDMLTVLQTLEELAGRLACETATDAEIAEVRALHDE 129 Query: 135 MYGHYLHRDMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIRRVRYSANFARKRQRW 194 M Y D Y++ NQ IH +I + N L +A R++R+R+ + ++W Sbjct: 130 MVRRYEAGDRMQYYKLNQDIHSAIARLSGNAALADMHAMLQTRLKRIRFIGH--EGPEKW 187 Query: 195 AEAMREHEAILDALRRRAASELSDILFQHL 224 A A+ EH+ ++ AL R + LS++L HL Sbjct: 188 AAAVAEHQEMIAALEARDKARLSEVLGLHL 217 >VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae Length = 235 Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 109/211 (51%), Gaps = 4/211 (1%) Query: 13 TPPAAGNGSDRQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEMLGISRTPLREALK 72 + P S +E++ + L + +VEG + G+++ E +L + +SR PLREAL Sbjct: 4 SSPLVRQASTEKESTKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALM 63 Query: 73 VLAAEGLIELLPNRGARVRRLSPRDLEELFDVMAGLESLAGRLACEIITDEEIAAIERLH 132 + GLIE +P+ GARV +LSP L EL+ V LE +A RLA IT+ E+A +E L Sbjct: 64 RVEGLGLIERIPHIGARVIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLL 123 Query: 133 YEMYGHYLHRDMHGYF--QTNQQIHESIVAAARNETLKATYANFAGRIRRVRYSANFARK 190 H + YF Q + H I+ A RN+ L + + R+ Y R Sbjct: 124 STHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQLIGLLCDELYHLLRM-YRYQSPRS 182 Query: 191 RQRWAEAMREHEAILDALRRRAASELSDILF 221 R EA+ EH+ IL A+R+R EL+++L Sbjct: 183 HSRPVEALEEHKFILRAIRQR-DEELAEMLM 212 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 95/181 (52%), Gaps = 6/181 (3%) Query: 32 ILLRLRD----YVVEGNIPEGARVPERQLCEMLGISRTPLREALKVLAAEGLIELLPNRG 87 I +LRD +V G G R+ E QL G+SRTP+REAL L+A GL+E+ P RG Sbjct: 5 IFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIRPRRG 64 Query: 88 ARVRRLSPRDLEELFDVMAGLESLAGRLACEIITDEEIAAIERLHYEMYGHYLHRDMHGY 147 A V +P+ + E+F+VMA LE +AG LA T+E+ AA+ H + L + Y Sbjct: 65 AVVVDPAPQRVYEMFEVMAELEGMAGALAARRHTEEDSAALLAAHEKCREAVLSEETDRY 124 Query: 148 FQTNQQIHESIVAAARNETLKATYANFAGRIRRVRYSANFARKRQRWAEAMREHEAILDA 207 + N+ H +I A+ + L+ R+R R R R R + REH I++A Sbjct: 125 YYENEIFHRAIYTASHSGFLEEQCTTLHRRLRPYRRLQ--LRVRNRMKVSFREHGEIVEA 182 Query: 208 L 208 + Sbjct: 183 I 183 >BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 238 Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 10/211 (4%) Query: 23 RQEASLHGEILLRLRDYVVEGNIPEGARVPERQLCEMLGISRTPLREALKVLAAEGLIEL 82 R + L E+ LR+ + G+ GA + + + GISRTPLREAL+VL +GL+ Sbjct: 17 RSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIH 76 Query: 83 LPNRGARVRRLSPRDLEELFDVMA---GLESLAGRLACEIITDEEIAAIERLHYEMYGHY 139 LP RG RV + DL L D A L+ +A R A E +D +IA + R H Sbjct: 77 LPGRGVRV---ASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKL-RAHVAGQDKV 132 Query: 140 LH-RDMHGYFQTNQQIHESIVAAARNETLKATYANFAGRIRRVRYSANFARKRQRWAEAM 198 + D Y Q+N H +++ A N +L A R+ ++ +F+ R +A+ Sbjct: 133 VDPWDPKAYTQSNVDFHMAVMNTAGNASLIAFVPLL--RMTSQVFAPSFSLSVDRARDAI 190 Query: 199 REHEAILDALRRRAASELSDILFQHLRNKRA 229 REH AI++A+ R E + H+R A Sbjct: 191 REHAAIVEAIAARDGEEAERLARAHIRATTA 221 >AGc2620 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 244 Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 11/215 (5%) Query: 25 EASLHG-EILLRLRDYVVEGNIPEGARVPERQLCEMLGISRTPLREALKVLAAEGLIELL 83 +A+ HG ++ LR+ ++ G +P G R+ E E+L ISRTP+REAL L EGL+ L Sbjct: 5 DAATHGGRAVIELREKILSGELPGGMRLFEVSTAELLDISRTPVREALSRLTEEGLLNRL 64 Query: 84 PNRGARVRRLSPRDLEELFDVMAGLESLAGRLACE-----IITDEEIAAIERLHYEMYGH 138 P G VRR D+ + +V +E A RLA E + +E A +++L Sbjct: 65 PGGGFVVRRFGFADVVDAIEVRGVMEGTAARLAAERGVSKVALEEIDATVQQLDLCFGDR 124 Query: 139 YLHRDMHGYFQTNQQIHESIVAAA-----RNETLKATYANFAGRIRRVRYSANFARKRQR 193 D GY N+ H + A R E +A+ FA + AN R+ Sbjct: 125 VDDVDFDGYAALNRIFHHQLAALCGSEMIRREVERASSLPFASPSAFLPDKANIGAFRRS 184 Query: 194 WAEAMREHEAILDALRRRAASELSDILFQHLRNKR 228 A +H+AI+ A+ R + + +H R R Sbjct: 185 LRGAQEQHKAIVAAIVAREGARAEAVAREHSRTAR 219