BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0072.0013.p         (182 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl2583 [S] COG3672 Predicted periplasmic protein Atu Agrobacter...   117   1e-26
SMc04352 [S] COG3672 Predicted periplasmic protein Sme Sinorhizo...   108   8e-24
AGc3225 [S] COG3672 Predicted periplasmic protein Atu Agrobacter...   108   9e-24
SMc00360 [S] COG3672 Predicted periplasmic protein Sme Sinorhizo...   102   6e-22
mlr0118 [S] COG3672 Predicted periplasmic protein Mlo Mesorhizob...   101   8e-22

>AGl2583 [S] COG3672 Predicted periplasmic protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 218

 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 8/157 (5%)

Query: 18  SEPTLAPMAYTMFCMRYADECKPKARARMVFRGGATRLTRQRIADLIEVNASVNRSIAPQ 77
           S PT+AP+A+  FC   AD+C       MV       LT+Q+  +L  VNA +N SI   
Sbjct: 67  SRPTIAPIAFAKFCDSAADQCVRIGDGDMV------ELTKQKRMELQRVNAEINTSIIYA 120

Query: 78  RNERGLAGEEWLINPARGDCNDYAVSKRHELLARGWPMRDLLLSEVVTSSGEHHLVLVVR 137
             + G   ++W +NPA GDC+D+AV+KR  LL  GWP   L ++   T+ G  H VLVV 
Sbjct: 121 SEQDG--EDDWKLNPASGDCDDFAVTKRQRLLRAGWPSGALRIATARTTDGIGHAVLVVS 178

Query: 138 ARGGDIVLDNLNAQIRSWSQARYRWVRMQTPANPDHW 174
              GD+VLDN    ++ W     +W+++Q+  NP  W
Sbjct: 179 TSQGDLVLDNRTNVVKPWKAVDLKWIKIQSHENPRIW 215


>SMc04352 [S] COG3672 Predicted periplasmic protein Sme Sinorhizobium
           meliloti
          Length = 196

 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 91/168 (54%), Gaps = 10/168 (5%)

Query: 15  IRFSEPTLAPMAYTMFCMRYADECKPKARARMVFRGGATRLTRQRIADLIEVNASVNRSI 74
           +R +    AP A+  FC+R    C      + V       L  ++I++L ++N+SVN SI
Sbjct: 34  MRTAGKAFAPPAFASFCVREPRLCNTGGGKKAVV------LAPEKISELKQINSSVNASI 87

Query: 75  APQRNERGLAGEE--WLINPARGDCNDYAVSKRHELLARGWPMRDLLLSEVVTSSGEHHL 132
             +R++R   G+E  W +  A GDC D+A+ K+ ELL RGWP   LLL+ V    GE H 
Sbjct: 88  R-ERSDRANVGKEDDWRVPTAYGDCEDFAILKKRELLKRGWPASALLLT-VARYRGEGHT 145

Query: 133 VLVVRARGGDIVLDNLNAQIRSWSQARYRWVRMQTPANPDHWAAVARA 180
           VL VR   GD+VLDN    +R WS+  Y +   Q+ +N   W  +A A
Sbjct: 146 VLTVRTSEGDLVLDNRTNSVRDWSRTPYNYFARQSQSNGKRWELIAGA 193


>AGc3225 [S] COG3672 Predicted periplasmic protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 202

 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 6/155 (3%)

Query: 24  PMAYTMFCMRYADECKPKARARMVFRGGATRLTRQRIADLIEVNASVNRSIAPQRNERGL 83
           P+ +  FC  Y  EC+P +        G  +LT +R   +++VN +VN +I P  +    
Sbjct: 40  PIGHYEFCQTYQSECQPTS-----LDNGPLQLTEERWKTMLDVNYTVNTTITPMTDMEIY 94

Query: 84  AGEE-WLINPARGDCNDYAVSKRHELLARGWPMRDLLLSEVVTSSGEHHLVLVVRARGGD 142
             EE W      GDC D+ + KR  L+ +G+   +LL++ V+  +GE H VL VR   GD
Sbjct: 95  GVEERWAYPTTVGDCEDFVLLKRKMLMNKGFSPSNLLITVVLQPNGEGHAVLTVRTDRGD 154

Query: 143 IVLDNLNAQIRSWSQARYRWVRMQTPANPDHWAAV 177
            VLDN+  ++ +WS+  Y +++ Q  ANP  W  +
Sbjct: 155 FVLDNMRNKVMNWSETEYTYLKRQDTANPGRWVKI 189


>SMc00360 [S] COG3672 Predicted periplasmic protein Sme Sinorhizobium
           meliloti
          Length = 225

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 6/162 (3%)

Query: 21  TLAPMAYTMFCMRYADECKPKARARMVFRGGATRLTRQRIADLIEVNASVNRSIAPQRNE 80
           T  P+ +  FC +Y  EC  +++A++       R+T    A + +VNASVNR IAP  + 
Sbjct: 60  TSQPIGHYEFCQKYRGECNVRSKAKV-----PPRVTAGGWAAIRQVNASVNRQIAPVTDI 114

Query: 81  RGLAGEEWLINPAR-GDCNDYAVSKRHELLARGWPMRDLLLSEVVTSSGEHHLVLVVRAR 139
                +E    P R GDC D+A+ KR  L+ +G+   +LL++ V    GE H VL VR  
Sbjct: 115 ELTGRDEVWSYPGRQGDCEDFALEKRRRLMQKGFSAGNLLMTVVRKPDGEGHAVLTVRTA 174

Query: 140 GGDIVLDNLNAQIRSWSQARYRWVRMQTPANPDHWAAVARAG 181
            GD +LDNL+  +R W+   YR+++ Q   +   W  +  +G
Sbjct: 175 QGDFILDNLDDGVRLWTHTPYRFLKRQATNHSGRWVTIDNSG 216


>mlr0118 [S] COG3672 Predicted periplasmic protein Mlo Mesorhizobium loti
          Length = 202

 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 7/159 (4%)

Query: 21  TLAPMAYTMFCMRYADECKPKARARMVFRGGATRLTRQRIADLIEVNASVNRSIAPQRNE 80
           T  P+ +  FC  +  EC  ++   +        LT + + D+  VN SVN  + P  + 
Sbjct: 37  TSQPIGHYDFCKIHVAECSIRSPDSV-----PEHLTSKLLHDISAVNLSVNTRVKPMSDM 91

Query: 81  RGLAGEEWLINPARG--DCNDYAVSKRHELLARGWPMRDLLLSEVVTSSGEHHLVLVVRA 138
                +EW   P  G  DC DYA+ KR EL + G  + +LL++ V    GE H VL VR 
Sbjct: 92  DNYGKDEWWAYPDNGFGDCEDYALEKRRELNSLGIAIANLLMTVVRKPDGEGHAVLTVRT 151

Query: 139 RGGDIVLDNLNAQIRSWSQARYRWVRMQTPANPDHWAAV 177
             GD +LDNL  ++R W+Q  YR+++ Q   N  HW ++
Sbjct: 152 DKGDFILDNLTDKVRLWNQTSYRYLKRQASDNTGHWVSI 190