BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0070.0018.p         (582 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0210 [KT] COG3437 Response regulator containing a CheY-like r...   186   2e-46
XF0853_2 [T] COG0642 Signal transduction histidine kinase Xfa Xy...   129   1e-29
L0124 [T] COG5002 Signal transduction histidine kinase Lla Lacto...   127   8e-29
MA3405_3 [T] COG0642 Signal transduction histidine kinase Mac Me...   123   1e-27
all3985_2 [T] COG0642 Signal transduction histidine kinase Nos N...   123   2e-27

>VCA0210 [KT] COG3437 Response regulator containing a CheY-like receiver
           domain and an HD-GYP domain Vch Vibrio cholerae
          Length = 522

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 170/302 (56%), Gaps = 1/302 (0%)

Query: 22  SARKWKIAVIDDDHAVHEGTRFALSDYNLNGSTLEILSAYSAAEGRTLMRDNPDIAAVLL 81
           S   W + ++DDD  +H+ TR AL+ +      LE++S  S  E R +M +  DIA  L+
Sbjct: 31  SQEPWCVLLVDDDEQMHQITRLALTGFKFQNRPLELISVLSGLEARKVMAERSDIALALV 90

Query: 82  DVIMETDVAGLELVEFIRNEIKNETVRIILRTGQPGQAPERRVIVQYDINDYKAKTELTA 141
           DV+MET+ AGL+LV +IR E++N  VR++LRTGQ GQAPE RVI +Y+I+DYK KTELT 
Sbjct: 91  DVVMETEHAGLDLVRYIREELQNRQVRLVLRTGQAGQAPEDRVIKEYEIDDYKEKTELTT 150

Query: 142 DKLFTSLTAALRSYQQLERMVQTRRGLEIIIDAASTLYDFKSMQRLAEGVLTQLASLLNV 201
            KL T L + LR+Y+ L  +   + GL  +I+A++ + + KS+Q  A  VL QL SLL +
Sbjct: 151 QKLRTLLYSMLRAYRDLCLIEDQKLGLSHVIEASANVQNTKSLQSYATAVLNQLTSLLKL 210

Query: 202 DCAGILVLRDDG-NAAAADFSVLACSGCYSRFIGTTSSKALDPDLRHMVEEAFQRRKNEF 260
             +    +     ++   +   +A +         +  K L  D++   +E   +R    
Sbjct: 211 HASAFYCVATPCPDSEKCNALTVATTAERVELYVESPFKGLPEDVQRRCKEVLSQRTTRD 270

Query: 261 ADHRSVLYSRTGSGREVVVLLQAERQLSDTDRALVEIFSSRLSIAFDNVILYQQLHEANT 320
                V + +   G + V+ +  E++LS+ DR L+EI+   + + F+N+ L   L E + 
Sbjct: 271 YGDAYVFFKQDERGVDSVLYVGFEQELSELDRKLLEIYMYNIGLTFENINLMVDLRETSK 330

Query: 321 QL 322
           +L
Sbjct: 331 EL 332


>XF0853_2 [T] COG0642 Signal transduction histidine kinase Xfa Xylella
           fastidiosa 9a5c
          Length = 250

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 353 FKNEILGTVAHDLKNPLGVILGRTEMLTELIGAGSPKENVTSQVEHIRDATKRLTSMVDH 412
            K+E L T++H+L+ PL  ILG +E+L + I    P     S +       KRL S +  
Sbjct: 1   LKDEFLSTLSHELRTPLTTILGWSELLLQRIDEQHPCYKGLSVIASSAKVQKRLISDMLD 60

Query: 413 LISDAMADAFDITIRREPVDVAALVNEVTEANLPSAVNKQQSISVSGPQQ-FVTMCDADR 471
           L S  +     + ++ E +D+   + EV     P   +K Q + +   +   + + DA R
Sbjct: 61  LSSMLLGK---MQLKMEVLDLVEQIREVIGLYEPVVDSKGQRLLLRASEMPCLVLGDATR 117

Query: 472 IREAIDNLVSNAIKYSPIGGKITVTVSHEGDDTVIRIVDQGPGLSPEDLGRLFGRFQRLS 531
           +R+  +NL+SNAIK++P  G I V +  +GD   + + D G G++ E L  LF RF++  
Sbjct: 118 LRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAEFLPHLFSRFRQAD 177

Query: 532 AKPTAGESSTGLGLSIVKRIIDMHGGHVTAQSPGPGQGSTFTVTL 576
              T      GLGL+IV+ +++MHGG+V A SPG G+G+ FTV+L
Sbjct: 178 GTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGIGKGAMFTVSL 222


>L0124 [T] COG5002 Signal transduction histidine kinase Lla Lactococcus
           lactis
          Length = 480

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 357 ILGTVAHDLKNPLGVILGRTEMLTELIGAGSPKENVTSQVEHIRDATKRLTSMVDHLISD 416
            +  V+H+L+ PL  +    E L +  GA   KE  +S +      T R+  M+  L++ 
Sbjct: 231 FVSNVSHELRTPLTSVKAYLEALED--GAIEDKETASSFINVSLTETNRMIRMISDLLTL 288

Query: 417 AMADAFDITIRREPVDVAALVN-------EVTEANLPSAVNKQQSISVSGPQQFVTM-CD 468
           +  D   I + +E +++ A ++       ++ E      ++   ++     +Q + +  D
Sbjct: 289 SRMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEID 348

Query: 469 ADRIREAIDNLVSNAIKYSPIGGKITVTVSHEGDDTVIRIVDQGPGLSPEDLGRLFGRFQ 528
            D+I + IDN++ NAIKYSP GG IT++V     D +I I DQG G+   DL ++F RF 
Sbjct: 349 TDKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFY 408

Query: 529 RL-SAKPTAGESSTGLGLSIVKRIIDMHGGHVTAQSPGPGQGSTFTVTLPAT 579
           R+ +A   +    TGLGLSIV  I+ +HGG + A S G G+G+TF+ TLP +
Sbjct: 409 RVDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLPYS 460


>MA3405_3 [T] COG0642 Signal transduction histidine kinase Mac Methanosarcina
           acetivorans str.C2A
          Length = 256

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 128/231 (55%), Gaps = 3/231 (1%)

Query: 350 ANGFKNEILGTVAHDLKNPLGVILGRTEMLTELIGAGSPKENVTSQVEHIRDATKRLTSM 409
           AN  K+E L  ++H+LK PL  I+G +++L E I AG   E  +  V+ I  + K L  +
Sbjct: 15  ANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEI-AGPLNEKQSRYVQFISSSGKNLLEI 73

Query: 410 VDHLISDAMADAFDITIRREPVDVAALVNEVTEANLPSAVNKQQSISVSGPQQFVTM-CD 468
           ++ ++  + A++ +  +  E   V   +N+V    LP A  K   ++     + + +  D
Sbjct: 74  INDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQAQEKNIILNYQSENRTLWITAD 133

Query: 469 ADRIREAIDNLVSNAIKYSPIGGKITVTVSHEGDDTVIRIVDQGPGLSPEDLGRLFGRFQ 528
             + R+ ++NL+SNAIK++P GG I VT+  EG    I + D G G+  +   ++F  F 
Sbjct: 134 EGKFRQIMENLLSNAIKFTPAGGSIDVTLKQEGLLVTIEVKDTGIGIPEDSFEKIFKPFI 193

Query: 529 RLSAKPTAGESSTGLGLSIVKRIIDMHGGHVTAQSPGPGQGSTFTVTLPAT 579
           ++ +  +     TGLGL++VK+ ++MHGG++  +S   G+GS+F   LP T
Sbjct: 194 QIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVESK-IGEGSSFRFELPVT 243


>all3985_2 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC
           7120
          Length = 252

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 8/232 (3%)

Query: 353 FKNEILGTVAHDLKNPLGVILGRTEMLTELIGAGSPKENVTSQVEHIRDATKRLTSMVDH 412
            K+E L  V+H+L++PL  ILG + +L       SP E +   +E I    +  T +++ 
Sbjct: 1   MKDEFLAIVSHELRSPLNGILGWSRLLRT--RKLSP-EKIEQALESIERNAQAQTQLIED 57

Query: 413 LISDAMADAFDITIRREPVDVAALVNEVTEANLPSAVNKQQSISVSGPQQF---VTMCDA 469
           L+  +     +I +   P  +  ++    +   P A  K  SI +     F   +   D 
Sbjct: 58  LLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTK--SIQIISRLNFDIGLVSADP 115

Query: 470 DRIREAIDNLVSNAIKYSPIGGKITVTVSHEGDDTVIRIVDQGPGLSPEDLGRLFGRFQR 529
           +R+++ I NL+SNA+K++P GG++ + +     +  I+++D G G+SPE L  +F RF++
Sbjct: 116 ERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETNVQIQVIDTGTGISPEFLPYVFDRFRQ 175

Query: 530 LSAKPTAGESSTGLGLSIVKRIIDMHGGHVTAQSPGPGQGSTFTVTLPATET 581
             A  T  +   GLGL+IV+ ++++H G V+  SPG GQG+TFTV LP   T
Sbjct: 176 ADATTTRNQGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLPLLAT 227