BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0070.0009.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aer...   114   7e-26
BMEII1022 [K] COG1414 Transcriptional regulator Bme Brucella mel...   103   1e-22
BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella mel...    65   4e-11

>PA1630 [K] COG1414 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 288

 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 78/120 (65%), Gaps = 1/120 (0%)

Query: 5   VGSRVPIATTAMGRAYIWALPPDERAALLRELRDHYGSRWAKMRDGIERSGETVAKHGFT 64
           VGS + +  +A+GRA + A+P DER  +L  +R  +   W ++R G+ER+    A +GF 
Sbjct: 168 VGSHLSLHRSAIGRACLAAMPEDEREFILGHIRKRHPEDWPEVRKGLERAFRDYADYGFC 227

Query: 65  MSAGDWQNDVAAVGVALRLNDGTGPYAFNCGAPAFRFTEDRLLNDIGPRLVAMVRNIEQA 124
           +S G+WQ DV AVGVAL  ++  G  AFNCG P+F    ++L +DIGPRL+ MV NIE A
Sbjct: 228 LSLGEWQRDVNAVGVALH-HESHGLLAFNCGGPSFHLKREKLEDDIGPRLLHMVHNIEAA 286


>BMEII1022 [K] COG1414 Transcriptional regulator Bme Brucella melitensis
          Length = 284

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 75/121 (61%), Gaps = 1/121 (0%)

Query: 5   VGSRVPIATTAMGRAYIWALPPDERAALLRELRDHYGSRWAKMRDGIERSGETVAKHGFT 64
           +GS +P+A +++GRA + A+P DER  +L  +R+     W  +R G++R+      +G+ 
Sbjct: 164 IGSTLPLAGSSVGRACLAAMPEDERTFILEHIREREPENWPSIRKGLDRALRDFEDYGYC 223

Query: 65  MSAGDWQNDVAAVGVALRLNDGTGPYAFNCGAPAFRFTEDRLLNDIGPRLVAMVRNIEQA 124
           +S G+W  DV +V V L ++   G   FNCG P+F+   ++L +DIGPRL+ MV NI  A
Sbjct: 224 LSIGEWHRDVNSVAVPL-VHKQYGVLVFNCGGPSFQLPREKLEDDIGPRLIEMVHNISSA 282

Query: 125 L 125
           +
Sbjct: 283 V 283


>BMEII0219 [K] COG1414 Transcriptional regulator Bme Brucella melitensis
          Length = 308

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 61/127 (48%)

Query: 1   VQLDVGSRVPIATTAMGRAYIWALPPDERAALLRELRDHYGSRWAKMRDGIERSGETVAK 60
           ++L+VGSR+PI  TAMG +Y   +   +R ALL  +         ++      + +  A+
Sbjct: 176 LRLNVGSRLPIWKTAMGLSYYAGMEESQREALLERMLQCEPEHAERILRLTNHALDDYAR 235

Query: 61  HGFTMSAGDWQNDVAAVGVALRLNDGTGPYAFNCGAPAFRFTEDRLLNDIGPRLVAMVRN 120
            GF +S GDW + + AVGV  R  DGT   A  CG             +IGP L  +   
Sbjct: 236 DGFVVSCGDWYSYINAVGVPFRPTDGTQLVAITCGGITDIAPRGVCYGEIGPALKELAAE 295

Query: 121 IEQALGG 127
           +++ L G
Sbjct: 296 LQERLLG 302