BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0069.0008.p         (53 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2959 [L] COG2003 DNA repair proteins Atu Agrobacterium tumefa...    95   5e-20
SMc00299 [L] COG2003 DNA repair proteins Sme Sinorhizobium meliloti    87   1e-17
msr1029 [L] COG2003 DNA repair proteins Mlo Mesorhizobium loti         82   3e-16
BMEI0718 [L] COG2003 DNA repair proteins Bme Brucella melitensis       80   1e-15
MA1979 [L] COG2003 DNA repair proteins Mac Methanosarcina acetiv...    59   4e-09

>AGc2959 [L] COG2003 DNA repair proteins Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 305

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 49/53 (92%)

Query: 1   MHNHPSGDPTPSQADIQMTKAIVDIAKPLGIAVHDHIIVGKNGHTSFKGMRLM 53
           +HNHPSGDPTPS+ADI+MTK I+D AKPLGI VHDHII+GK+GH SFKG+RL+
Sbjct: 253 IHNHPSGDPTPSRADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI 305


>SMc00299 [L] COG2003 DNA repair proteins Sme Sinorhizobium meliloti
          Length = 262

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/52 (73%), Positives = 46/52 (88%)

Query: 1   MHNHPSGDPTPSQADIQMTKAIVDIAKPLGIAVHDHIIVGKNGHTSFKGMRL 52
           +HNHPSGDPTPS+ADI MTK I + AKPLGIA+HDH+I+GK+GH S KG+RL
Sbjct: 210 VHNHPSGDPTPSRADIDMTKLIAEAAKPLGIALHDHVIIGKDGHVSLKGLRL 261


>msr1029 [L] COG2003 DNA repair proteins Mlo Mesorhizobium loti
          Length = 66

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 1  MHNHPSGDPTPSQADIQMTKAIVDIAKPLGIAVHDHIIVGKNGHTSFKGMRLM 53
          MHNHPSGDPTPS+ADI+MTK I++  K LGIAVHDHII+G+ G+ S KG+ L+
Sbjct: 14 MHNHPSGDPTPSRADIEMTKEIIEAGKRLGIAVHDHIIIGRKGYASMKGLLLI 66


>BMEI0718 [L] COG2003 DNA repair proteins Bme Brucella melitensis
          Length = 249

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/53 (64%), Positives = 44/53 (83%)

Query: 1   MHNHPSGDPTPSQADIQMTKAIVDIAKPLGIAVHDHIIVGKNGHTSFKGMRLM 53
           +HNHPSGDPTPS+ADI MTK +V+ AK L I VHDH+I+GK+GH S + +RL+
Sbjct: 197 VHNHPSGDPTPSRADIDMTKQLVNAAKALNITVHDHVIIGKHGHASLRSLRLI 249


>MA1979 [L] COG2003 DNA repair proteins Mac Methanosarcina acetivorans
           str.C2A
          Length = 229

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 1   MHNHPSGDPTPSQADIQMTKAIVDIAKPLGIAVHDHIIVGKNGHTSFK 48
           +HNHPSGDP+PS+ DI +T+ +V+  K LGI + DHII+G   + S K
Sbjct: 176 VHNHPSGDPSPSREDIMVTEKLVEGGKLLGIDILDHIIIGDGRYVSLK 223