BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0004.p (419 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00797 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)... 251 3e-66 AGl400 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) A... 186 1e-46 RSc0507 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 184 4e-46 SMc03265 [E] COG0665 Glycine/D-amino acid oxidases (deaminating)... 183 7e-46 AGl2918 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 177 4e-44 >SMc00797 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Sme Sinorhizobium meliloti Length = 417 Score = 251 bits (640), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 150/416 (36%), Positives = 219/416 (52%), Gaps = 5/416 (1%) Query: 9 QVDVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPSL 68 + DV VLGAG+VG+S+ + + G SVV++DRR +TSYGNAG+I + P P Sbjct: 2 KTDVVVLGAGIVGISSAIHLARLGKSVVLLDRRGAGEETSYGNAGLIQREGVFPYGFPHN 61 Query: 69 LKNLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLHR 128 L +Y N ++ + ++ R+ + +Q + A LI S+ H+ Sbjct: 62 FGALFRYALNNTIDASYHFRALPSLVPFLARYWWHSGFTQHQKIAHLYAPLIEHSIAEHQ 121 Query: 129 DWIVQAGAGHRIRETGWLKAWRSDGL--AAAQAEQAALAEFGIRSEVLDRQAISALEPNI 186 D I +GAG IR+ GW+K +R++ AA + + A FG+ + L + +EP+I Sbjct: 122 DLIDASGAGDLIRKDGWMKVFRTEKERDAAYKDAERLSAGFGVNHQKLSTSELKTIEPSI 181 Query: 187 IPAYSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEP--HGDGWRVQLAD 244 + GL S+ P ++ KAY + GG + +E G GWRV D Sbjct: 182 QAELAGGLRWTDPWSIRDPHSLNKAYLAYFQSLGGRLVSGDAATLEHILEGAGWRVATPD 241 Query: 245 GEIAARHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLM 304 G + AR VVVALGPW+ + R LGY PLA +RGYH H+ +L + DA+ G+ + Sbjct: 242 GPLEAREVVVALGPWADTVTRKLGYHFPLAVKRGYHMHYGIREGAQLNNWVLDAEKGYFL 301 Query: 305 TPMEQGVRVTSGVELTARDAPSNFSQLEAVVPMARSVVEFGDAVGER-WRGARPTLPDSL 363 PM +G+R+T+G E RDAP QL +AR + E W GARP PD + Sbjct: 302 APMLRGIRLTTGAEFALRDAPKTPVQLTRAERVAREFFPLAERRDEEPWMGARPCTPDMM 361 Query: 364 PMIGAAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRYIA 419 P+IG APRH GLW AFG+ H G T GP TG A+A + G+ P + + P R++A Sbjct: 362 PVIGKAPRHEGLWFAFGHAHHGMTLGPVTGRALAQAMTGEKPVIDITPYRPERFLA 417 >AGl400 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 413 Score = 186 bits (471), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 137/410 (33%), Positives = 208/410 (50%), Gaps = 4/410 (0%) Query: 11 DVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPSLLK 70 DV V+GAG+VG+SA +AA+ RGLSV ++DR P + S GNAG + ILPL +P +L Sbjct: 5 DVIVIGAGVVGLSAAIAAQGRGLSVTVIDREGPAAGASAGNAGAFAFTDILPLASPGILW 64 Query: 71 NLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLHRDW 130 PK+L + L A+AL A W+ RF A S+ AA ++ S + Sbjct: 65 KAPKWLLDPLGPLSVPPAYALKIAPWMFRFWRACAASKVEHSTAAQTAMMDLSRAELEPF 124 Query: 131 IVQAGAGHRIRETGWLKAWRSDG-LAAAQAEQAALAEFGIRSEVLDRQAISALEPNIIPA 189 + + +R+ G L+ + S+ ++ A A GI L+ + +S ++P I P Sbjct: 125 LRKTDTIAMLRKEGNLQVYESEAEFESSLAGWKARERHGIEFRHLNTEQMSEIQPGIAPR 184 Query: 190 YSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDGWRVQLADGEI-A 248 ++ G S+ P A A GG I + + P DG V DG Sbjct: 185 FTCGTFTPGWFSIADPKFYTLALADHFRTIGGRIECLDVASLRPLEDGVEVVSHDGRTRK 244 Query: 249 ARHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLMTPME 308 A VV+A G +S + R LG ++PL ERGY+ +P A L + GF++T + Sbjct: 245 AGKVVLAAGAFSHRIARSLGEKIPLETERGYNTT-LPAGAFDLRTQVTFGGHGFVVTRLS 303 Query: 309 QGVRVTSGVELTARDAPSNFSQLEAVVPMARSVVE-FGDAVGERWRGARPTLPDSLPMIG 367 G+RV VEL + P+NF++ EA++ A++ + G++W G RP+LPDSLP IG Sbjct: 304 SGIRVGGAVELGGLELPANFARSEALLAKAKAFLPGLKTEGGKQWMGFRPSLPDSLPAIG 363 Query: 368 AAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRY 417 A + AFG+ H+G T GT +A ++ G P + +AFSP R+ Sbjct: 364 QARHTARVVYAFGHGHLGLTQSAGTARIVADLLTGQKPAIDTRAFSPQRF 413 >RSc0507 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Rso Ralstonia solanacearum Length = 423 Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 129/418 (30%), Positives = 205/418 (49%), Gaps = 9/418 (2%) Query: 6 PAQQVDVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNT 65 PA + + V+GAG+VGVS L ++ G V ++D+ SYGNAG +S S++ + Sbjct: 8 PAGRRAITVVGAGIVGVSCALQLQRDGHRVTLLDQAGIGEGCSYGNAGCLSVASVVAMAL 67 Query: 66 PSLLKNLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLK 125 P +L +PK+L + L ++ W+++++ A T ++ R A L L + Sbjct: 68 PGMLAQVPKWLADPLGPLTVRWSYLPRALPWLLKWIRAGTEARARAVARPLADLFSATYP 127 Query: 126 LHRDWIVQAGAGHRIRETGWLKAWRSDGLAAAQAE---QAALAEFGIRSEVLDRQAISAL 182 +R + A IR TG L WR+ LA E Q+ G+RS+ L + L Sbjct: 128 GYRGLLEPAQYDDLIRATGHLYVWRT--LARGPGEVLAQSIRDATGVRSQALSAGEVREL 185 Query: 183 EPNIIPAYSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDG-WRVQ 241 EP + +GLL +P +VK A A GGT+ + + G R+ Sbjct: 186 EPALAGDIRSGLLLPDNGFTCNPERLVKTLAAHFVAAGGTVLRRKVLDFALGERGPTRLY 245 Query: 242 LADGEIAARHVVVALGPWSAEL-LRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADG 300 G + +V+ G WS L R G R+PL ERGYH + P + RP+ D + Sbjct: 246 TDCGSLPVSTLVICAGAWSMRLGARLTGVRIPLDTERGYHA-MLRAPTVQPSRPVMDCER 304 Query: 301 GFLMTPMEQGVRVTSGVELTARDAPSNFSQLEAVVPMARSVVEFGDAVGER-WRGARPTL 359 F+ TPME G+R+ VE+ D P +F + + + +++ G+ W G RP++ Sbjct: 305 KFIATPMEDGLRIAGTVEIGGLDIPPDFRRADTLTRHGQALFPGLAFTGDSAWMGYRPSI 364 Query: 360 PDSLPMIGAAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRY 417 PDSLP+I + R ++ AFG+ H+G T PGTG IA ++AG P +A+ + R+ Sbjct: 365 PDSLPVIDRSERFPDVFFAFGHGHLGMTGAPGTGRLIADLVAGRPPFIDARPYGLQRF 422 >SMc03265 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Sme Sinorhizobium meliloti Length = 429 Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 125/412 (30%), Positives = 199/412 (48%), Gaps = 4/412 (0%) Query: 9 QVDVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPSL 68 +V V+GAG+VG+S A + G+SV+IVDR + S+GNAG I+ ++P + P L Sbjct: 3 EVSAIVVGAGIVGLSVAYGALRNGVSVMIVDRNPEGDKASFGNAGGIAVTEVVPASVPGL 62 Query: 69 LKNLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLHR 128 K +P ++ + L +A W+ F T S+ R + AL + G Sbjct: 63 WKKVPFWMLDPLGPLALRMAHTPRLLPWLWNFARVGTASEVRRISTALADINGRVYDDLL 122 Query: 129 DWIVQAGAGHRIRETGWLKAWRSD-GLAAAQAEQAALAEFGIRSEVLDRQAISALEPNII 187 + G + + G L + S+ GL + A + G+ + L I +EP + Sbjct: 123 PLFNEVGLAGDLLQKGALTVYESENGLRNDMHDWDAKRDLGVEVQELTAAEIREMEPALS 182 Query: 188 PAYSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDGWRVQLADG-E 246 P G+ Q + + P VV L A G I + + R+ P DG +V L G E Sbjct: 183 PIVKNGVFTPQWSHIKDPKRVVDVLRHWLVANGAEIVRGEVDRVVPTSDGAKVVLDGGRE 242 Query: 247 IAARHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLMTP 306 + AR +V+A G WS L + +G RV + ERGY + +P L R + AD F+ TP Sbjct: 243 MTARKIVIAAGAWSGRLAKQMGDRVLVESERGYTTT-IASPGVALEREVIFADRKFVATP 301 Query: 307 MEQGVRVTSGVELTARDAPSNFSQLEAVVPMARSVV-EFGDAVGERWRGARPTLPDSLPM 365 + G+R+ E + N+++ +A+V +A+ + + G W G RPT PDSLP+ Sbjct: 302 LSIGLRIGGAAEFGGLEVAPNYARSKALVKLAKHYFPDIREEGGVEWSGHRPTTPDSLPV 361 Query: 366 IGAAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRY 417 IG + + AFG+ H+G T GP TG ++ ++ G P + FS R+ Sbjct: 362 IGRSGPSSNIIYAFGHGHLGLTQGPTTGKIVSDLLLGRKPLIDIAPFSVARF 413 >AGl2918 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 417 Score = 177 bits (449), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 131/423 (30%), Positives = 204/423 (48%), Gaps = 18/423 (4%) Query: 5 TPAQQVDVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLN 64 T + DV V+G G++G A L + G VV+++R E S GNAGI++ I+P+ Sbjct: 2 TKTLKCDVLVIGTGIIGSMAALYLQNAGRDVVLLERGEVARGASSGNAGILAFPEIIPIP 61 Query: 65 TPSLLKNLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSL 124 P ++K P++L + L A+A A W+ RF A+ R HGL + Sbjct: 62 APGIMKKAPRWLFDPLGPLSVPPAYAPKIAPWLWRFWRASAERNFR------HGLKSLT- 114 Query: 125 KLHRDWIVQAG-------AGHRIRETGWLKAWRSD-GLAAAQAEQAALAEFGIRSEVLDR 176 +++R V+ H + +TG L + S+ L AA+ + G E + R Sbjct: 115 EINRLAAVEMAHVAAMPELSHLVSKTGTLDLYDSEANLNAARRDWEEKQSAGFAFERVGR 174 Query: 177 QAISALEPNIIPAYSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGD 236 I AL+P + P + + A V P +A ++ A G ++R+ RI+ G+ Sbjct: 175 NEIDALQPGLAPQFRHAIFSADGLQVSDPYDFTRAIFDLVVARGASLRKGEAERIDAVGE 234 Query: 237 GWRVQLADGE-IAARHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPI 295 V L +G+ I A VV+A G WS +L LG VPL ERGY+ +P A L R + Sbjct: 235 STIVTLENGDKIDADKVVIAGGAWSKKLAETLGNIVPLETERGYNTT-LPAGAFDLTRQL 293 Query: 296 HDADGGFLMTPMEQGVRVTSGVELTARDAPSNFSQLEAVVPMA-RSVVEFGDAVGERWRG 354 + D GF++TP+ G+RV VEL + NF + EA++ A R + G++W G Sbjct: 294 YFNDHGFVVTPLSTGIRVGGAVELGGLELKPNFRRAEAMLKKAGRFLPGLKLEGGQQWMG 353 Query: 355 ARPTLPDSLPMIGAAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSP 414 RP++PD LP+IG A + AFG+ H+G T T + + +G F P Sbjct: 354 FRPSMPDCLPVIGTARATPSVIYAFGHGHLGLTQSAATARLVTQLASGKETAISVDPFRP 413 Query: 415 NRY 417 R+ Sbjct: 414 GRF 416