BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0050.p         (132 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGl2700 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu ...   105   3e-23
AF0435 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Afu A...    81   6e-16
PA2013 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae P...    75   3e-14
ydbS [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Eco Esc...    72   2e-13
ZcaiD [I] COG1024 Enoyl-CoA hydratase/carnithine racemase EcZ Es...    72   4e-13

>AGl2700 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 280

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/130 (41%), Positives = 79/130 (60%)

Query: 3   FGLPEVKVGVFPMQVLSLLQSIAPSRLVNEWALTGEPFDARSAQAAGLLNYVVPAAELDA 62
           FGLPEV+VG+FP  V + L +  P   + E A  G+P  A  A+  GL+N   P AELD 
Sbjct: 150 FGLPEVRVGLFPTMVAAKLLAKMPLGGLQEMAYLGQPITAAEAKGLGLVNRTAPLAELDG 209

Query: 63  KVDWLIGRIVDKSPTAIRRGKYAMRAIASMSFDESIAFTESQIALLAMTEDAKEGLKAFG 122
            ++ ++ ++   +P AI  GK A+ A+  M  DE +AF E  IA ++ +++A+EG +AF 
Sbjct: 210 LIEEVLAKLRQNAPGAIAAGKAALLAMRDMPSDERLAFAEDAIAAISGSDEAREGRQAFA 269

Query: 123 EKRKPTWTGR 132
           EKR P W GR
Sbjct: 270 EKRPPKWIGR 279


>AF0435 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Afu
           Archaeoglobus fulgidus
          Length = 256

 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 7/134 (5%)

Query: 3   FGLPEVKVGVFP----MQVLSLLQSIAPSRLVNEWALTGEPFDARSAQAAGLLNYVVPAA 58
           FG PE+ + + P     Q L  L  +    +  +  LTGE  DA++A   GL+  VV   
Sbjct: 126 FGQPEINLAIIPGAGGTQRLPRLVGLG---MAKKLVLTGEIIDAQTALRIGLVEEVVEHE 182

Query: 59  ELDAKVDWLIGRIVDKSPTAIRRGKYAMRAIASMSFDESIAFTESQIALLAMTEDAKEGL 118
            L  +   +  +I++KSP A++  K A+ A  +M   E + +  S  ALL  +EDAKEG+
Sbjct: 183 RLMERAKEVAAKIIEKSPLAVKVAKKALNASINMPLKEGLRYEASLFALLFSSEDAKEGM 242

Query: 119 KAFGEKRKPTWTGR 132
           +AF EKRKP + GR
Sbjct: 243 RAFLEKRKPEFRGR 256


>PA2013 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae Pseudomonas
           aeruginosa
          Length = 265

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 3   FGLPEVKVGVFPMQVLSLLQSIAPSRLVNEWALTGEPFDARSAQAAGLLNYVVPAAELDA 62
           F L EV++G+ P  +   +      R    ++LT E FD R A   GLL+   PAAEL++
Sbjct: 134 FCLSEVRIGLIPATIAPFVVKAIGQRAARRYSLTAERFDGRRASELGLLSESCPAAELES 193

Query: 63  KVDWLIGRIVDKSPTAIRRGKYAMRAIASMSFDESI-AFTESQIALLAMTEDAKEGLKAF 121
           + +  I  ++  SP A+   K     + +     ++  +TE+ IA + ++ + +EGL+AF
Sbjct: 194 QAEAWIANLLQNSPRALVACKALYHEVEAAELSPALRRYTEAAIARIRISPEGQEGLRAF 253

Query: 122 GEKRKPTW 129
            EKR P W
Sbjct: 254 LEKRTPAW 261


>ydbS [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Eco Escherichia
           coli K12
          Length = 255

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 9/135 (6%)

Query: 3   FGLPEVKVGVFPMQ--VLSLLQSIAPSRLVNEWALTGEPFDARSAQAAGLLNYVVPAAEL 60
           FGLPE+ +G+ P       L++S+  S L ++  L+GE   A+ AQ AGL++ V P+   
Sbjct: 125 FGLPEITLGIMPGAGGTQRLIRSVGKS-LASKMVLSGESITAQQAQQAGLVSDVFPS--- 180

Query: 61  DAKVDW---LIGRIVDKSPTAIRRGKYAMRAIASMSFDESIAFTESQIALLAMTEDAKEG 117
           D  +++   L  ++   SP A++  K A+R    ++    +A       LLA TED  EG
Sbjct: 181 DLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEG 240

Query: 118 LKAFGEKRKPTWTGR 132
           + AF +KR P + GR
Sbjct: 241 ISAFLQKRTPDFKGR 255


>ZcaiD [I] COG1024 Enoyl-CoA hydratase/carnithine racemase EcZ Escherichia
           coli O157:H7 EDL933
          Length = 297

 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 3   FGLPEVKVGVFPMQVLSL-LQSIAPSRLVNEWALTGEPFDARSAQAAGLLNYVVPAAELD 61
           F LPE K+G+ P     L L  I P  +VNE  +TG    A  A   G++N VV  AEL 
Sbjct: 163 FALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELM 222

Query: 62  AKVDWLIGRIVDKSPTAIRRGKYAMRAIASMSFDESIAFTESQI----ALLAMTEDAKEG 117
                L  ++V+ +P AI   K   R  + M  +ES ++  S +      +  +EDA EG
Sbjct: 223 DNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESYSYIRSGVLKHYPSVLHSEDAIEG 282

Query: 118 LKAFGEKRKPTWTGR 132
             AF EKR P W GR
Sbjct: 283 PLAFAEKRDPVWKGR 297