BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0034.p         (165 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC3628 [V] COG1680 Beta-lactamase class C and other penicillin b...   102   3e-22
CC3190 [V] COG1680 Beta-lactamase class C and other penicillin b...   102   5e-22
CC1568 [V] COG1680 Beta-lactamase class C and other penicillin b...   100   3e-21
CC1567 [V] COG1680 Beta-lactamase class C and other penicillin b...    94   2e-19
Rv1367c [V] COG1680 Beta-lactamase class C and other penicillin ...    65   8e-11

>CC3628 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Ccr Caulobacter vibrioides
          Length = 479

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 30  RWESGGGGMVGTIGDYARFSQMLLNGGSYEGRRYLKPETIALMARDHIGPETGVMRDQNY 89
           R   GG G+V +I DYARFS+MLL  G+ +G R LKP T+ LMA DH+ P       +++
Sbjct: 338 RLTMGGAGLVASIDDYARFSRMLLGQGALDGVRILKPSTVRLMASDHLDPRVTA---RSW 394

Query: 90  YPGPNS-GFGLGFAVRTSVP--PSTDW-PLGEYRWDGVGGTFFFIDPADDLFGIFMVQTP 145
            PG  + GFG   AVR S P  PS +   +GEY WDG+  T F++DPA+ L  +  VQT 
Sbjct: 395 LPGKGAVGFGFDVAVRNSQPQTPSENRGAVGEYFWDGMASTVFWVDPANQLTAVLFVQTL 454

Query: 146 SQRGRIQHELKTLIY 160
              G +  + +  +Y
Sbjct: 455 PFDGTLHRDFRAAVY 469


>CC3190 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Ccr Caulobacter vibrioides
          Length = 490

 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 6/137 (4%)

Query: 32  ESGGGGMVGTIGDYARFSQMLLNGGSYEGRRYLKPETIALMARDHI-GPETGVMRDQNYY 90
           +SGGGG+V T  DY RF +MLLNGG  +G R L P+TI LM  +HI G +  V   ++ +
Sbjct: 348 KSGGGGLVSTADDYMRFCRMLLNGGELDGVRLLSPKTIKLMTMNHIPGGQELVQASKSLF 407

Query: 91  PGP---NSGFGLGFAVRTSVPPSTDW-PLGEYRWDGVGGTFFFIDPADDLFGIFMVQ-TP 145
                   GFGLGFA+      + +   LGEY W G+  T F+IDP +DL  +FM Q  P
Sbjct: 408 SEAVFEGLGFGLGFAMTIDQARTKNLGSLGEYFWGGMASTAFWIDPVEDLAVVFMTQLMP 467

Query: 146 SQRGRIQHELKTLIYQA 162
           S    I+ EL+TL+Y +
Sbjct: 468 STSYPIRRELRTLVYSS 484


>CC1568 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Ccr Caulobacter vibrioides
          Length = 436

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 22  VRNPRKPLRWESGGGGMVGTIGDYARFSQMLLNGGSYEGRRYLKPETIALMARDHIGPET 81
           V +  KP    SGGGG+V T  DYARF+QMLLNGG  EG R LKPET+ LM  + +    
Sbjct: 285 VLDITKPPAMASGGGGLVSTNADYARFAQMLLNGGELEGARILKPETVTLMRTNALSDAI 344

Query: 82  GVMRDQNYYPGPNSGFGLGFAVRTSVPPSTDWPLGEYRWDGVGGTFFFIDPADDLFGIFM 141
               +  +      GFGL FA+      +     G Y W G  GT+F+IDP +DLF + M
Sbjct: 345 MTSSEPPFNTARGRGFGLDFAIVLDSAKAGPQGEGTYSWGGAAGTWFWIDPKNDLFFLGM 404

Query: 142 VQTPSQRG-----RIQHELKTLIYQAM 163
           +   ++ G      I  +   L+Y A+
Sbjct: 405 IHILNKAGDPAIKDIDDDSAKLVYDAL 431


>CC1567 [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Ccr Caulobacter vibrioides
          Length = 490

 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/156 (39%), Positives = 90/156 (57%), Gaps = 14/156 (8%)

Query: 23  RNPRKPLRWESGGGGMVGTIGDYARFSQMLLNGGSYEGRRYLKPETIALMARDHIGPETG 82
           R+  KP     GGGG+V T GD+ARF+QM+LN G  +G R LKPET+ALM ++H+ PE  
Sbjct: 316 RDVSKPPAAPLGGGGLVSTAGDFARFAQMILNKGELDGVRILKPETVALMTQNHL-PEGF 374

Query: 83  VMRDQNYY--------PGP-NSGFGLGFAVRTSV-PPSTDWPL--GEYRWDGVGGTFFFI 130
           V+              P P  +G G G  +  +V P ++  P+  G   W G  GT+F+I
Sbjct: 375 VVTTNGTAGVLAPAARPFPFAAGMGYGIDMAVAVDPAASGAPVGPGTVSWGGSAGTWFWI 434

Query: 131 DPADDLFGIFMVQTPSQRGR-IQHELKTLIYQAMGR 165
           DPA++LF + M+Q     G  +  + +TL+YQA+ R
Sbjct: 435 DPANNLFFVGMIQRLGGVGPGLDAQSRTLVYQALER 470


>Rv1367c [V] COG1680 Beta-lactamase class C and other penicillin binding
           proteins Mtu Mycobacterium tuberculosis H37Rv
          Length = 377

 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 14/125 (11%)

Query: 28  PLRWESGGGGMVGTIGDYARFSQMLLNGGSYEGRRYLKPETIALMARDHIGPETGVMRDQ 87
           P  + + GGG+  T  DY RF +MLL  G+ +G R L PE++ LM  D +  E    +  
Sbjct: 219 PPSFCNAGGGLWSTADDYLRFVRMLLGDGTVDGVRVLSPESVRLMRTDRLTDE---QKRH 275

Query: 88  NYYPGP---NSGFGLGFAVRTSVPPSTDWP------LGEYRWDGVGGTFFFIDPADDLFG 138
           ++   P     GFGL  +V T   P+   P      LG + W G  GT++  DP+ DL  
Sbjct: 276 SFLGAPFWVGRGFGLNLSVVTD--PAKSRPLFGPGGLGTFSWPGAYGTWWQADPSADLIL 333

Query: 139 IFMVQ 143
           ++++Q
Sbjct: 334 LYLIQ 338