BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0005.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll3974 Non COG                                                       135   2e-32
BMEI0261 [E] COG0410 ABC-type branched-chain amino acid transpor...   134   8e-32
SMc01948 [E] COG0410 ABC-type branched-chain amino acid transpor...   129   2e-30
AGc4396 [E] COG0410 ABC-type branched-chain amino acid transport...   127   5e-30
PA4909 [E] COG0410 ABC-type branched-chain amino acid transport ...   110   1e-24

>mll3974 Non COG
          Length = 242

 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 75/87 (86%)

Query: 1   MSRPRLLMLDEPSLGLAPLIARQIFDAIRTLNRQDGLTVLIVEQNANHALKLAHRGYVMV 60
           M+RP+LL+LDEPSLGLAPLI +QIFDAIR LNR  GLTV +VEQNA  ALKLA RGYVMV
Sbjct: 154 MARPKLLLLDEPSLGLAPLIVKQIFDAIRELNRTQGLTVFLVEQNAFGALKLATRGYVMV 213

Query: 61  NGLITLAGTGAELLQRPEIRAAYLEGG 87
           NG +T++GTG ELL  PE+RAAYLEGG
Sbjct: 214 NGNVTMSGTGKELLANPEVRAAYLEGG 240


>BMEI0261 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Bme Brucella melitensis
          Length = 249

 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 75/88 (85%)

Query: 1   MSRPRLLMLDEPSLGLAPLIARQIFDAIRTLNRQDGLTVLIVEQNANHALKLAHRGYVMV 60
           M RP+LL+LDEPSLGLAPLI +QIF+AI+ LNR  GLTV +VEQNA  ALKLA RGYVMV
Sbjct: 161 MVRPKLLLLDEPSLGLAPLIVKQIFEAIKELNRTQGLTVFLVEQNAFGALKLADRGYVMV 220

Query: 61  NGLITLAGTGAELLQRPEIRAAYLEGGR 88
           NG IT++G+G ELL  PE+RAAYLEGGR
Sbjct: 221 NGSITMSGSGRELLSDPEVRAAYLEGGR 248


>SMc01948 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Sme Sinorhizobium meliloti
          Length = 241

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 76/88 (86%)

Query: 1   MSRPRLLMLDEPSLGLAPLIARQIFDAIRTLNRQDGLTVLIVEQNANHALKLAHRGYVMV 60
           M+RP+LL+LDEPSLGLAPLI + IF+AI+ LN+ +GLTV +VEQNA  ALKL+ RGYVMV
Sbjct: 153 MARPKLLLLDEPSLGLAPLIVKGIFEAIKVLNKNEGLTVFLVEQNAFGALKLSDRGYVMV 212

Query: 61  NGLITLAGTGAELLQRPEIRAAYLEGGR 88
           NG +T++G+G +LL  PE+RAAYLEGGR
Sbjct: 213 NGRVTMSGSGKDLLANPEVRAAYLEGGR 240


>AGc4396 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 242

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 76/88 (86%)

Query: 1   MSRPRLLMLDEPSLGLAPLIARQIFDAIRTLNRQDGLTVLIVEQNANHALKLAHRGYVMV 60
           M+RP+LL+LDEPSLGLAPLI + IF+AI+ LN+++GLTV +VEQNA  ALKL+ R YVMV
Sbjct: 154 MARPKLLLLDEPSLGLAPLIVKGIFEAIKKLNKEEGLTVFLVEQNAFAALKLSDRAYVMV 213

Query: 61  NGLITLAGTGAELLQRPEIRAAYLEGGR 88
           NG +T++G+G ELL  P++RAAYLEGGR
Sbjct: 214 NGKVTMSGSGRELLADPQVRAAYLEGGR 241


>PA4909 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Pae Pseudomonas aeruginosa
          Length = 238

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 1   MSRPRLLMLDEPSLGLAPLIARQIFDAIRTLNRQDGLTVLIVEQNANHALKLAHRGYVMV 60
           MSRP+LL+LDEPSLGLAP++ +QIF  +R L R  G+T+ +VEQNANHALKL+ R YVMV
Sbjct: 153 MSRPKLLLLDEPSLGLAPIVVKQIFQTLRELAR-SGMTIFLVEQNANHALKLSDRAYVMV 211

Query: 61  NGLITLAGTGAELLQRPEIRAAYLEG 86
            G I ++G+G ELL   E+R AYL G
Sbjct: 212 TGEIRMSGSGEELLGNQEVRNAYLGG 237