BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0003.p         (55 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01948 [E] COG0410 ABC-type branched-chain amino acid transpor...    59   3e-09

>SMc01948 [E] COG0410 ABC-type branched-chain amino acid transport systems,
          ATPase component Sme Sinorhizobium meliloti
          Length = 241

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 31/40 (77%)

Query: 7  TTPLLAVRGVRAAYGKIEALKGVDIEINRGEIVALIGANG 46
          T PLL VR V   YG I AL GVD+E++RGEIVALIGANG
Sbjct: 2  TAPLLHVRSVETYYGNIRALNGVDMEVHRGEIVALIGANG 41