BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0013.p (502 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1683 Non COG 225 2e-58 CC2909 Non COG 198 2e-50 SMa0113_2 [T] COG3920 Signal transduction histidine kinase Sme S... 181 2e-45 CC0836_2 Non COG 177 7e-44 CC3170_2 Non COG 167 7e-41 >CC1683 Non COG Length = 555 Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 162/537 (30%), Positives = 261/537 (48%), Gaps = 63/537 (11%) Query: 5 TLPVRLALLVAGTMLPLIIFAVGIVFHNYQRDRQAATQRVLETARSIRLLLDAEMQRMTG 64 T+ RL + P I+ +V Y ++ +++ T R++ L D ++ + Sbjct: 17 TVTRRLLFMALTLAAPAILLMAALVAVQYTEGQRRFAAQLVTTTRALSLATDRQIGQGQS 76 Query: 65 GLQVLALTNSLRNSDFDNFRRVAVGFIDQYGKDGVVLVADRAGRQVFSSLTPDTASLPPR 124 LQ LA++ +L D F + A +D G+DG +++ D+ RQ ++ P A P Sbjct: 77 VLQGLAVSPALSQGDLATFEKQAREAVD--GRDGWIVLMDK-DRQWINTRMPPGAPPPNA 133 Query: 125 NNLEILEKVFTTRQPQYSNLFFGAVKQRLIITVEVPVMRDGEVLYDISFSPPIEVFQAII 184 E + TT + SNL II V +PV+ DG++ + +++ VF A++ Sbjct: 134 PPSEQSWREMTTGKSNVSNLI-PRPNAGPIIGVNMPVLVDGQI-FVLAYMQHPAVFHALM 191 Query: 185 EKQRLNQDWTISIFDSDGVNLARVPNPQATIGQRASPSLFAEMFRQSEATLPTVSLEGVA 244 Q L + WT SI D + LAR + + +G+ A + M + + T +L+GV Sbjct: 192 TGQGLPETWTASIVDRNAALLARSHDQEKMLGRHAGLDMQRAMALAQDGVVDTHTLDGVQ 251 Query: 245 LITGFTRSRVTGWTVAAGIAENSLVAPLWRSLAITSVIGGVLLLVGLGFAVRMATTIAR- 303 ++ F+RS GWT G+ + L + SL + +++ +G+ A+ A I+R Sbjct: 252 TLSAFSRSPTYGWTFIVGVPHDELNRTILGSLGPALLGSALMIALGVMAALAFARPISRD 311 Query: 304 -------------------------------------GEML-------------HDLLIE 313 E+L L+I Sbjct: 312 VRGLVAEAEALAAGAPLAPAPSALQEIAEVRGSLRAAAEILRHREEEARTAAERQQLMIN 371 Query: 314 ELNHRVKNTLAILQSIATQTFRSASRTERDKFEGRLGALAEAHNLLSTDKWQGSDFQDVV 373 ELNHRVKNTL ++QS+A + + +F RL ALA AH+LL+ W+G+D ++V Sbjct: 372 ELNHRVKNTLVVVQSLARHSLKGGGELGLAQFNERLLALAGAHDLLTRRSWEGADLGELV 431 Query: 374 SRVLRPYLLNTSERVKMFGPRVPLSPRLALVLSMILHEMATNAAKYGALSNDTGTVTLDW 433 + L+PY + +V + GP PL+P A+ L+MILHE+ATNA+KYGALS + G + + W Sbjct: 432 AEALQPY----ATQVSIEGPATPLAPNAAVALAMILHELATNASKYGALSTEAGRIQVSW 487 Query: 434 EIVNESPGPKLRMIWTETGGPPVTAPVQRGFGSRLIERSARDQLGGEATVDFLPHGV 490 + + + +LR+IW E GGPPV P +RGFGSRLI S R L G + D+ P G+ Sbjct: 488 TMESRT---RLRLIWRERGGPPVKPPSRRGFGSRLITSSLRGDLSGASEFDYAPEGL 541 >CC2909 Non COG Length = 556 Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 161/519 (31%), Positives = 241/519 (46%), Gaps = 55/519 (10%) Query: 23 IFAVGIVFHNYQRD-RQAATQRVLETARSIRLLLDAEMQRMTGGLQVLALTNSLRNSDFD 81 + A+G + + R+ R Q++L TAR++ +D + + LA +L D+ Sbjct: 34 LLAMGFLLASADRESRGRLYQQLLTTARALNGAVDRQAATGISVAETLATDEALLAGDWA 93 Query: 82 NFRRVAVGFIDQYGKDGVVLVADRAGRQVFSSLTPDTASLPPRNNLEILEKVFTTRQPQY 141 F A + G ++VAD G+QV ++ P LP K F + + Sbjct: 94 GFHARAR--RAMERRTGWIVVADANGQQVLNTRVPYGRPLPRIQRTPEETKAFLAGRSKV 151 Query: 142 SNLFFGAVKQRLIITVEVPVMRDGEVLYDISFSPPIEVFQAIIEKQRLNQDWTISIFDSD 201 S+L G V +ITV P+ G Y +S+ F ++ +QR+ W ++ D+ Sbjct: 152 SDLLAGPVAGTPVITVGTPITVKGR-FYVLSYVVDAASFTSVFRQQRVPDTWVATLLDNR 210 Query: 202 GVNLARVPNPQATIGQRASPSLFAEMFRQSEATLPTVSLEGVALITGFTRSRVTGWTVAA 261 +AR + G +AS + + +E ++SLEGV +TRS TGWT+ Sbjct: 211 QRVIARSRLNEKFTGAQASADMTENLRHSTEGVNRSISLEGVPTRVAYTRSPQTGWTLVV 270 Query: 262 GIAENSLVAPLWRSLAITSVIGGVLLLVGLGFA--------------VRMATTIARGEML 307 I L + + RS+A+ + I +LL++GL A VR A+ I RGE L Sbjct: 271 AIPRKELASTVNRSVAVGTGIFLLLLVLGLWLALVYSRRINRDMRRLVRDASAIGRGESL 330 Query: 308 -------------------------------HDLLIEELNHRVKNTLAILQSIATQTFRS 336 ++I ELNHRVKNTLA +Q++A QTF Sbjct: 331 QPAPRDSLEEIAAVHAALLTASEELKAREERQGVMINELNHRVKNTLATVQALARQTFAK 390 Query: 337 ASRTERDKFEGRLGALAEAHNLLSTDKWQGSDFQDVVSRVLRPYLLNTSERVKMFGPRVP 396 F RL AL+ AH+LL+ W+ +D ++ L + +RV GP V Sbjct: 391 VDGAPLGVFTDRLIALSGAHDLLTRTGWREADMAALIEASLGAH----GDRVDREGPTVA 446 Query: 397 LSPRLALVLSMILHEMATNAAKYGALSNDTGTVTLDWEIVNESPGPKLRMIWTETGGPPV 456 L+P A+ LSM+ HE+ATN+AKYGALS G V L W + L W + GGP V Sbjct: 447 LAPHTAVGLSMVFHELATNSAKYGALSAPGGRVALTWR--RDPVSDTLFFTWRDVGGPQV 504 Query: 457 TAPVQRGFGSRLIERSARDQLGGEATVDFLPHGVVYSVT 495 P GFG+RLIE S R + G+A DFLP G+V+ + Sbjct: 505 IPPASLGFGTRLIESSIRREQKGQARFDFLPDGLVFEAS 543 >SMa0113_2 [T] COG3920 Signal transduction histidine kinase Sme Sinorhizobium meliloti Length = 201 Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 126/197 (63%), Gaps = 1/197 (0%) Query: 303 RGEMLHDLLIEELNHRVKNTLAILQSIATQTFRSASRTER-DKFEGRLGALAEAHNLLST 361 R E LL+ ELNHRVKNTLA +QS+A QTFR + +E +F+ RL ALA AH++L+ Sbjct: 4 RSEEHRKLLVNELNHRVKNTLATVQSLAAQTFRGVNASEDFGRFQSRLVALARAHDVLTR 63 Query: 362 DKWQGSDFQDVVSRVLRPYLLNTSERVKMFGPRVPLSPRLALVLSMILHEMATNAAKYGA 421 + WQG+D +V+ + P + +RV+ GP + L P++AL LSM HE+ TNAAKYGA Sbjct: 64 ESWQGADLGEVLHATINPICVEPQQRVQASGPPLRLRPKMALALSMAFHELCTNAAKYGA 123 Query: 422 LSNDTGTVTLDWEIVNESPGPKLRMIWTETGGPPVTAPVQRGFGSRLIERSARDQLGGEA 481 L+ND G + ++W + N L + W E GGP V P + GFG+RL+ER+ +LGG+ Sbjct: 124 LTNDGGLIKVNWHVSNIESVSHLHLQWEEIGGPSVMVPARTGFGTRLLERALARELGGKV 183 Query: 482 TVDFLPHGVVYSVTSAL 498 + F P GV + + + L Sbjct: 184 DLVFAPSGVRFHIEAPL 200 >CC0836_2 Non COG Length = 204 Score = 177 bits (448), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 97/203 (47%), Positives = 129/203 (63%), Gaps = 4/203 (1%) Query: 299 TTIARGEMLHDLLIEELNHRVKNTLAILQSIATQTFRSASRTE--RDKFEGRLGALAEAH 356 T R E+ LL+ ELNHRVKN+LA +Q+IA Q+F + ++ F R+ ALAEAH Sbjct: 3 TERKRAELHLRLLVNELNHRVKNSLATIQAIAAQSFNGQRDMDEAKEAFSNRIVALAEAH 62 Query: 357 NLLSTDKWQGSDFQDVVSRVLRPYLLNTSERVKMFGPRVPLSPRLALVLSMILHEMATNA 416 +LL+ + W+G++ DV +RV L R ++ G + LSP+ AL LSM LHE+ATNA Sbjct: 63 DLLTRENWEGAEMHDVAARV--AALHGGDARFELSGVAIRLSPKTALSLSMALHELATNA 120 Query: 417 AKYGALSNDTGTVTLDWEIVNESPGPKLRMIWTETGGPPVTAPVQRGFGSRLIERSARDQ 476 KYGALS G V + W++ E P+L + WTE GGPPVT P +RGFGSRLIER + Sbjct: 121 VKYGALSVPEGVVRIVWDMAPEPGAPRLDLTWTERGGPPVTPPQRRGFGSRLIERGLAAE 180 Query: 477 LGGEATVDFLPHGVVYSVTSALE 499 L G A +DF P GVV + + LE Sbjct: 181 LAGAAVIDFQPEGVVCRIRALLE 203 >CC3170_2 Non COG Length = 219 Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/183 (49%), Positives = 120/183 (65%), Gaps = 5/183 (2%) Query: 310 LLIEELNHRVKNTLAILQSIATQTFRS--ASRTERDKFEGRLGALAEAHNLLSTDKWQGS 367 LLI ELNHRVKNTLA +QS+A QT R+ + +KFE RL L+ H++L+ + W G+ Sbjct: 21 LLINELNHRVKNTLATVQSMAAQTLRNEPSPAVAFEKFEARLMGLSGVHDILTRESWHGA 80 Query: 368 DFQDVVSRVLRPYLLNTSERVKMFGPRVPLSPRLALVLSMILHEMATNAAKYGALSNDTG 427 ++V R LRP+ + R+++ GP + L P AL +++ILHE+ATNA KYGALS G Sbjct: 81 PLREVAERALRPFDEGGT-RIEIAGPPIRLQPGGALTMALILHELATNALKYGALSCAEG 139 Query: 428 TVTLDWEIVNESPGPKLRMIWTETGGPPVTAPVQRGFGSRLIERSARDQLGGEATVDFLP 487 V L W +S L W E GGPPV AP ++GFGSRLIERS R +L GEAT+D+ P Sbjct: 140 RVRLFWGYDADSR--TLDCQWIEAGGPPVVAPTRKGFGSRLIERSLRGELKGEATMDYHP 197 Query: 488 HGV 490 G+ Sbjct: 198 DGL 200