BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0066.p (417 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 301 1e-81 PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae... 276 6e-74 PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 273 4e-73 RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso ... 269 1e-71 PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 239 1e-62 >PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 439 Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 161/395 (40%), Positives = 232/395 (58%), Gaps = 18/395 (4%) Query: 38 IERGRYLAITSDCASCHTVPGGKPFAGGRPIETPFGNIVAPNITPDLETGIGAWSEEAFD 97 + +G YLA DC +CHT GKPFAGG P+ETP G + + NITPD +TGIG +S E FD Sbjct: 28 VRQGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITPDRKTGIGDYSFEDFD 87 Query: 98 GAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAY-LNSLDPVSNVVIANTLPFPFNI 156 AVR GV +G LYPAMPY +Y ++S D+ A+ AY ++ ++PV A+ +P+P ++ Sbjct: 88 RAVRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWPLSM 147 Query: 157 RATMRIWDALYF-KAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTPKTF------LGGD 209 R + W + + +F+ + RGA+LV+G HCGACHTP+ L Sbjct: 148 RWPLAFWRWTFAPEVKDFQAAAGQDPVLARGAYLVEGLGHCGACHTPRGLGMQEKALAAS 207 Query: 210 RTDQYLQGSY-LQGWSAPDITNDKRMGLGEWSAEDVASYLKTGHNRISAATGPMAEAVSL 268 YL GS L+ W A + D R GLG WS D+ S+L+TG + SA G M++ V Sbjct: 208 DGAAYLSGSAPLENWIAKSLRGDHRTGLGSWSEADLVSFLRTGRSERSAVFGGMSDVVVH 267 Query: 269 STSHMTDEDTRAIAAYLKSLPGKAGIETPLPANSATMSA---------GNAIYRDQCSAC 319 S +MTD D AIA YLKSLP + P + + A G A+Y D C AC Sbjct: 268 SMQYMTDADLTAIARYLKSLPPADPADQPHVYDESVAQALFHGDDSKTGAALYVDNCGAC 327 Query: 320 HGIEGKGVAKLFPSVASSSIVRSNDPTTAIRMVLRGARSVGTRGEPTAPGMPSYGWQLDD 379 H +GKG A++FP++A + +V +DPT+ + +VL+G T P++ MP +GW+++D Sbjct: 328 HRTDGKGYARVFPALAGNPVVTGSDPTSLVHIVLKGGTLPATHQAPSSFTMPPFGWRMND 387 Query: 380 GQVAAVLNYIRNSWGGAAPAIDARDVSRVRSDTAA 414 ++A V+N+IR SWG AP++ +V R+R DT A Sbjct: 388 QEIADVVNFIRTSWGNQAPSVSVDEVRRLRKDTGA 422 >PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 441 Score = 276 bits (706), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 157/393 (39%), Positives = 217/393 (55%), Gaps = 24/393 (6%) Query: 38 IERGRYLAITSDCASCHTVPGGKPFAGGRPIETPFGNIVAPNITPDLETGIGAWSEEAFD 97 IE+GRY+A DC +CHT P G P AGG ++TP G I + NITPD ETGIG +S E FD Sbjct: 33 IEKGRYVAQLGDCIACHTGPQGAPMAGGLELKTPMGTIYSTNITPDRETGIGRYSFEEFD 92 Query: 98 GAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAYL-NSLDPVSNVVIANTLPFPFNI 156 A+RKGV G LYPAMPY +Y K+S +D+ A+ AYL + + PV+ + + +PFN Sbjct: 93 RAMRKGVTAEGVNLYPAMPYPSYAKISEEDMRALYAYLMHGVQPVTQANTPSAMSWPFNQ 152 Query: 157 RATMRIWDALYFKAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTP-------KTFLGGD 209 R + +W+ + F P NRGA+LV G HCGACHTP K Sbjct: 153 RWGLSLWNWAFLDDAPFTPSSDADPVINRGAYLVQGLGHCGACHTPRGIAFQEKAMSEAG 212 Query: 210 RTDQ-YLQGSYLQGWSAPDITNDKRMGLGEWSAEDVASYLKTGHNRISAATGPMAEAVSL 268 R+ Q YL G ++ W A + N W+ ED LKTG NR + +G M + + Sbjct: 213 RSGQFYLAGETVEQWQALSLRN-------LWTVEDTVQLLKTGQNRFATVSGSMTDVIHH 265 Query: 269 STSHMTDEDTRAIAAYLKSLP-GKAGI-----ETPLPANSATMSA-GNAIYRDQCSACHG 321 ST H +D+D AIA+YLKSLP GK + E PL A S+ G Y CS CH Sbjct: 266 STQHFSDDDLLAIASYLKSLPAGKDDLPMPDSERPLAAPVDLYSSRGGLGYAQFCSDCHR 325 Query: 322 IEGKGVAKLFPSVASSSIVRSNDPTTAIRMVLRGARSVGTRGEPTAPGMPSYGWQLDDGQ 381 +G GV +FP +A + V S +P+T + + L G ++ T MP + QL+D + Sbjct: 326 KDGSGVPGMFPPLAGNPTVASANPSTLLHITLTGWKTAQTATHSRVYTMPGFA-QLEDRE 384 Query: 382 VAAVLNYIRNSWGGAAPAIDARDVSRVRSDTAA 414 +A +L+++R+SWG +IDA V ++R A Sbjct: 385 IAEILSFVRSSWGNQGSSIDAGQVKKLRQRIEA 417 >PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 415 Score = 273 bits (699), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 142/380 (37%), Positives = 210/380 (55%), Gaps = 4/380 (1%) Query: 38 IERGRYLAITSDCASCHTVPGGKPFAGGRPIETPFGNIVAPNITPDLETGIGAWSEEAFD 97 ++RG YLA +DC +CHT GG PFAGG PI++PFG I NITPD E GIGA+S + F Sbjct: 30 VKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNITPDKEHGIGAYSADEFF 89 Query: 98 GAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAYLNSLDPVSNVVIANTLPFPFNIR 157 A+ +G R +GA LYPAMPY +Y + R+D DAI AYL + +P++ +L FPFN+R Sbjct: 90 AALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYLMAQEPIARPAPQTSLSFPFNVR 149 Query: 158 ATMRIWDALYFKAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTPKTFLGGDRTDQYLQG 217 + W+ LY K+ +P+ +S W RG ++V+ HCG CHTP+ G D+ L G Sbjct: 150 MGLAGWNLLYGKSVRLQPEEGRSEAWKRGQYMVEVLGHCGECHTPRNLAGALEQDKRLSG 209 Query: 218 SYLQGWSAPDITNDKRMGLGEWSAEDVASYLKTGHNRISAATGPMAEAVSLSTSHMTDED 277 L G+ AP + G W+ D+AS+LK G + + M V ST H+ D D Sbjct: 210 GLLNGYLAPSLLPGDLAARG-WTQPDLASFLKHGMSAQGSMFNEMFPVVHHSTQHLDDGD 268 Query: 278 TRAIAAY-LKSLPGKAGIETPLPANSATMSA--GNAIYRDQCSACHGIEGKGVAKLFPSV 334 A+A Y L P A + LP S G Y + C+ CHG EG+G + ++ Sbjct: 269 LAAMATYLLGDQPPPAKVVQALPEAQLNDSGKRGRQQYLNVCAGCHGGEGEGKPHIAVAM 328 Query: 335 ASSSIVRSNDPTTAIRMVLRGARSVGTRGEPTAPGMPSYGWQLDDGQVAAVLNYIRNSWG 394 ++ +R DP +R++ G G MP + +LDD Q+ +LNY+R +WG Sbjct: 329 NGNTTLRLQDPRNLLRVIEDGIVEQQFTGFERMQPMPGFAGKLDDEQLTDLLNYLRQTWG 388 Query: 395 GAAPAIDARDVSRVRSDTAA 414 G + + V++++ ++A+ Sbjct: 389 GLPGDLGPQQVAQLKMESAS 408 >RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia solanacearum Length = 429 Score = 269 bits (687), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 158/399 (39%), Positives = 219/399 (54%), Gaps = 30/399 (7%) Query: 37 EIERGRYLAITSDCASCHTVPGGKPFAGGRPIETP-FGNIVAPNITPDLETGIGAWSEEA 95 +I+RG YLAI DC +CHT PGGKPFAGG P++ P G I + NITPD +TGIG W E Sbjct: 32 QIKRGEYLAIAGDCVACHTAPGGKPFAGGLPLQIPMLGTIYSSNITPDPKTGIGKWRYED 91 Query: 96 FDGAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAYLN-SLDPVSNVVIANTLPFPF 154 F+ AVR+GV +G LYPAMPY +Y K++ D+ + AY + V T+ +P Sbjct: 92 FERAVRQGVSDDGENLYPAMPYPSYAKINDADMRDLYAYFRYGVAAVQYAPPPGTIRWPL 151 Query: 155 NIRATMRIWDALYFKAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTPKTF-----LGGD 209 N+R +++W+ + K + P + WNRGA+L G AHCG CHTP+ F + Sbjct: 152 NMRWPLKLWNLAFLKRAPYLPKGDMTPTWNRGAYLAQGLAHCGTCHTPRGFAMQEKAMDE 211 Query: 210 RTDQYLQGSYLQGWSAPDITNDKRMGLGEWSAEDVASYLKTGH-NRISAATGPMAEAVSL 268 R YL GS L GWSA +IT+D G+G W E + YL+TG I A GPM EAV Sbjct: 212 RGKGYLAGSTLAGWSAYNITSDPVSGIGGWKPEQIVQYLRTGSVPGIGQAAGPMGEAVQH 271 Query: 269 STSHMTDEDTRAIAAYLKSLPG------KAGIETPLPANSATMSAGNAI---------YR 313 S S MT+ D RAIA YL+++P +A PA G I Y Sbjct: 272 SFSRMTERDVRAIAEYLRTVPAVSTGAQRARHGWGTPATDVIALRGKPIETTIDAARLYL 331 Query: 314 DQCSACHGIEGKGVAK-LFPSVASSSIVRSNDPTTAIRMVLRG-ARSVGTRGEPTAPGMP 371 C+ CH +G+G +P + +S V + D ++++L G R G R GMP Sbjct: 332 GNCATCHQADGRGTPDGYYPPLLHNSAVGARDTRNLVQVMLHGIERRAGDR----HIGMP 387 Query: 372 SYGWQLDDGQVAAVLNYIRNSWGG-AAPAIDARDVSRVR 409 ++G QL D Q+AA+ NY+ +G A PA+ A ++++ R Sbjct: 388 AFGRQLSDAQLAALANYVTRQFGDPATPALTADEIAKRR 426 >PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 433 Score = 239 bits (609), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 147/401 (36%), Positives = 208/401 (51%), Gaps = 24/401 (5%) Query: 28 GGSDPQEFTEIERGRYLAITSDCASCHTVPGGKPFAGGRPIETPFGNIVAPNITPDLETG 87 G P +I RG LA DCA CHT GG AGGR + TPFG I + N+TPD +G Sbjct: 36 GTPGPFSAEQIARGERLAALGDCAVCHTREGGPRNAGGRALPTPFGTIYSSNLTPDRASG 95 Query: 88 IGAWSEEAFDGAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAYLNSLDPVSNVVIA 147 IG WS AF+ A+R GV +G+ LYPA PY A+T+ +D+ A+ AYL S V + A Sbjct: 96 IGGWSYPAFERAMRHGVARDGSYLYPAFPYTAFTRTRDEDLKALYAYLMSQPAVHSETPA 155 Query: 148 NTLPFPFNIRATMRIWDALYFKAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTPKTFLG 207 N LPFPF+ R M W+ L+ G +R +P ++ +WNRGA+L +G HC ACH+P+ LG Sbjct: 156 NQLPFPFDQRQLMAGWNLLFLDPGAYRDEPTRNQQWNRGAYLAEGLGHCSACHSPRNALG 215 Query: 208 GDRT-DQYLQGSYLQGWSAPDITNDKRMGLGEWSAEDVASYLKTGHNRISA-ATGPMAEA 265 +++ + G +GW+AP + + WS E + +YL+ G++ A+GPMA Sbjct: 216 AEKSGSAHFAGGEAEGWTAPALNASSPAPIA-WSEEALYAYLRHGYSAYHGVASGPMAPV 274 Query: 266 VSLSTSHMTDEDTRAIAAYLKSLPGKAGIETPLPANSAT-----------MSAGNAIYRD 314 V + DED RA+A YL S ET +G ++ Sbjct: 275 VGEGLAKQPDEDLRALAHYLASYAAAPAGETDQQQAQRLDRQGYGRVQPPSGSGARLFAG 334 Query: 315 QCSACHGI-EGKGVAKLFPSVASSSIVRSNDPTTAIRMVLRGARS--VGTRGEPTAPGMP 371 C ACH +G + PS+A +S V ++ P +R++L G S G G MP Sbjct: 335 ACLACHHDGDGPRFFGVRPSLALNSNVHADSPDNLLRIILDGIHSPATGDLGY-----MP 389 Query: 372 SYGWQLDDGQVAAVLNYIRNSWGG--AAPAIDARDVSRVRS 410 + LDD QVA + NY+R + G A P + A+ S R Sbjct: 390 GFRHSLDDRQVATLANYLRERFAGKPAWPDLAAKAASLRRQ 430