BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0047.p         (187 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2622 [L] COG0582 Integrase Rso Ralstonia solanacearum               85   8e-17
XF0631 [L] COG0582 Integrase Xfa Xylella fastidiosa 9a5c               68   1e-11

>RSc2622 [L] COG0582 Integrase Rso Ralstonia solanacearum
          Length = 400

 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 9/154 (5%)

Query: 2   VKITKRVVEAAEAQEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRI-GGRSRRYTIGLHG 60
           +K+TK  V+AA+ Q +   + D  + GF  +V  SG++ +++QYR   G  R+  +G +G
Sbjct: 4   IKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPSGRKVFMLQYRTNAGERRKPALGQYG 63

Query: 61  AWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRYFADLQAGLILGKGGRP 120
             T+E AR  A+  L +V  G DPA D+    KA TVKELC ++  D             
Sbjct: 64  ELTVEQARSLAQEWLAQVRRGGDPAADKAQARKAPTVKELCTKFMEDYSK--------LR 115

Query: 121 KKASTIVTDTGRIHRHIIPLIGTRRVKDLTKSDI 154
            K ST       I R+I+P+IG  +V+D+ + D+
Sbjct: 116 NKPSTQEGYQSVIDRNIVPMIGRMKVQDVKRPDV 149


>XF0631 [L] COG0582 Integrase Xfa Xylella fastidiosa 9a5c
          Length = 413

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 20/164 (12%)

Query: 1   MVKITKRVVEAAEA-QEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRIGGRSRRYTIGLH 59
           M K+TK  ++   A  +K+   WDD L GFG+RV  +GK +Y++Q R+ G S R +IG H
Sbjct: 1   MPKLTKNYIDKITAPADKEAFHWDDSLKGFGLRVTPTGKITYIVQGRVNGSSPRISIGPH 60

Query: 60  GAWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRY-FADLQAGLILGKGG 118
           G +T++ AR  A+  L  +  G DP        +A+  KE   R    D+  G    K  
Sbjct: 61  GVFTVDQARDVAREHLRSMRMGIDP--------RAVAKKEAAQRVTLRDVADGY---KRD 109

Query: 119 RPKKASTIVTDTGRIHRHIIPLIGT---RRVKDLTKSDINKXRN 159
           RP K S+       I RH+         + ++D+T+  + K  N
Sbjct: 110 RPLKDSS----KAEIERHVTTTFEAWLKKPLRDITREMVTKRFN 149