BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0041.p         (109 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI1730 [E] COG1984 Allophanate hydrolase subunit 2 Hin Haemophil...    87   9e-18
Cj1543 [E] COG1984 Allophanate hydrolase subunit 2 Cje Campyloba...    84   1e-16
FN0436 [E] COG1984 Allophanate hydrolase subunit 2 Fnu Fusobacte...    83   2e-16
BH1818 [E] COG1984 Allophanate hydrolase subunit 2 Bha Bacillus ...    80   9e-16
NMB0229 [E] COG1984 Allophanate hydrolase subunit 2 Nme Neisseri...    79   3e-15

>HI1730 [E] COG1984 Allophanate hydrolase subunit 2 Hin Haemophilus
           influenzae
          Length = 309

 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 51/67 (76%)

Query: 24  IAMGAIQVPGDGRPIVLMADRQSTGGYPKIATVIGPDLGRLAQARPGTTFRFEAVSIEEA 83
           I  G++QVP  G+PI+LMAD Q+TGGYPKIA VI  DLG LAQ R G+T +FEAVS++EA
Sbjct: 228 IQFGSVQVPPSGQPIILMADAQTTGGYPKIANVIDADLGALAQVRLGSTIKFEAVSLQEA 287

Query: 84  VAARRQE 90
              RR+ 
Sbjct: 288 AKLRRKN 294


>Cj1543 [E] COG1984 Allophanate hydrolase subunit 2 Cje Campylobacter
           jejuni
          Length = 321

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 4/80 (5%)

Query: 10  ETAADIINNSYDLGIAMGAIQVPGDGRPIVLMADRQSTGGYPKIATVIGPDLGRLAQARP 69
           + +ADII++        G+IQVP  G PI+LMA RQSTGGY KIATVI  DL  LAQA+ 
Sbjct: 226 KNSADIISDP----AVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLLAQAKL 281

Query: 70  GTTFRFEAVSIEEAVAARRQ 89
           G++F+F+++S++EA+   +Q
Sbjct: 282 GSSFKFQSISMQEALELYKQ 301


>FN0436 [E] COG1984 Allophanate hydrolase subunit 2 Fnu Fusobacterium
           nucleatum
          Length = 336

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 4/71 (5%)

Query: 13  ADIINNSYDLGIAMGAIQVPGDGRPIVLMADRQSTGGYPKIATVIGPDLGRLAQARPGTT 72
           ADII+++       G+IQVPG+G+PI+L+ADRQ+TGGY KIATVI  DL +LAQ  P  T
Sbjct: 228 ADIISDA----AVFGSIQVPGNGQPIILLADRQTTGGYTKIATVIKADLPKLAQMVPNDT 283

Query: 73  FRFEAVSIEEA 83
             F  ++IEEA
Sbjct: 284 IEFSLINIEEA 294


>BH1818 [E] COG1984 Allophanate hydrolase subunit 2 Bha Bacillus halodurans
          Length = 331

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 24  IAMGAIQVPGDGRPIVLMADRQSTGGYPKIATVIGPDLGRLAQARPGTTFRFEAVSIEEA 83
           I++G IQVP DG PI+LMADRQ+TGGYP+IA VI  DL  +AQA+PG   RF+  S++EA
Sbjct: 249 ISVGTIQVPADGNPIILMADRQTTGGYPRIAHVIAVDLPIIAQAKPGAAIRFQQASLKEA 308


>NMB0229 [E] COG1984 Allophanate hydrolase subunit 2 Nme Neisseria
           meningitidis MC58
          Length = 297

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 27  GAIQVPGDGRPIVLMADRQSTGGYPKIATVIGPDLGRLAQARPGTTFRFEAVSIEEAVAA 86
           G +QVP  G+PI+L+AD Q+TGGYPKIATV   DLGRLAQ R G+  +F+ + ++EA A 
Sbjct: 231 GTVQVPPGGKPIILLADAQTTGGYPKIATVAAADLGRLAQVRFGSKVKFKIIGLKEATAL 290

Query: 87  RRQE 90
           RR+ 
Sbjct: 291 RRKN 294