BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0027.p (307 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj1017c [E] COG0559 Branched-chain amino acid ABC-type transport... 108 1e-23 BMEII0102 [E] COG0559 Branched-chain amino acid ABC-type transpo... 106 7e-23 YPO3807 [E] COG0559 Branched-chain amino acid ABC-type transport... 105 2e-22 FN1431 [E] COG0559 Branched-chain amino acid ABC-type transport ... 100 3e-21 SP0750 [E] COG0559 Branched-chain amino acid ABC-type transport ... 99 8e-21 >Cj1017c [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Cje Campylobacter jejuni Length = 298 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 153/300 (51%), Gaps = 22/300 (7%) Query: 5 LVAGVLFGLYFSLVGIGLNLVFGVMRIVNLAHGDILMLGAFIALGVVGIAGIDPLFAVPL 64 LV G+ G ++L+ +G +V+GV+R++N AHGDI+M+GA+ AL + + L A+ L Sbjct: 10 LVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDIMMVGAYAALFCMTNLNVPFLGALSL 69 Query: 65 AFVVFVLVGVLLYWVLVPRLQGSANPEMLSIILFFGLSQVIEAVTTIFAGTSERSIQTRL 124 A + VG+ + L+ + P + +I G+S ++ + + ++ R Sbjct: 70 AMIFAACVGIATDRIAYKPLRQA--PRISLLITAIGISFFLQNLFNMLFTSTPR------ 121 Query: 125 LGTVFTTIKVKWFGGKAGGAGPIQIFGQGFPAPWVIAAITSLIAIALVYLYLYHTRLGTL 184 T +F G I +G ++ A+T +I IA++++ LY ++ G Sbjct: 122 -----TFTPPSYFEESVNFGGVITTYGS-----LMVPALTFVILIAVLWI-LYKSKYGIA 170 Query: 185 TRAVMSRRDEALATGIDVDRVSAAAFGIGLGIAAVAGVFAPFMFGSVTPAFGADATVTSF 244 RA+ GID +R+ A F +G +AAV GVF + SV P G + +F Sbjct: 171 IRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVEPTMGTLIGLKAF 230 Query: 245 AIVVLGSLGNPLGTALGGVVYGLCYMLVQTY---LSSWADLLPYVLLIVILLLRPSGLLG 301 A VLG +G+ +G LGG++ G ++V + LS + D ++ L+ ILL RP+G+LG Sbjct: 231 AAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIFLVFILLFRPTGILG 290 >BMEII0102 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 287 Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 85/300 (28%), Positives = 148/300 (49%), Gaps = 24/300 (8%) Query: 5 LVAGVLFGLYFSLVGIGLNLVFGVMRIVNLAHGDILMLGAFIALGVVGIAGIDPLFAVPL 64 ++ G+L G ++++ GL LV+GV+ IVNLAHG ++MLG ++ V GIDP V Sbjct: 8 VINGILLGGLYAIMAQGLALVWGVLNIVNLAHGTMIMLGGYVTWLVFANFGIDPFIGVFA 67 Query: 65 AFVVFVLVGVLLYWVLVPRLQGSANPEMLSIILFFGLSQVIEAVTTIFAGTSERSIQTRL 124 A V G L ++ + + P ++++ FG + IF ++ Sbjct: 68 AAAVMFCFGYALQRCVLNLV--ARGPMFNALLITFG-------IEIIFTDVAQHVFSADF 118 Query: 125 LGTVFTTIKVKWFGGKAGGAGPIQIFGQGFPAPWVIAAITSLIAIALVYLYLYHTRLGTL 184 + + V + ++G P ++A I + + ++ ++ T+LG Sbjct: 119 RAIIPSYSAVNF-----------NVYGITIPLMNLLAFIAAFVVSGFMFFFMMTTKLGRA 167 Query: 185 TRAVMSRRDEALATGIDVDRVSAAAFGIGLGIAAVA-GVFAPFMFGSVTPAFGADATVTS 243 RA A G++ + A FGIG+ IA VA G++A + P G T S Sbjct: 168 IRATAQNLTAARLYGVEPRHLYAVTFGIGVAIAGVAGGLYAT--VNQLNPYIGVPLTAKS 225 Query: 244 FAIVVLGSLGNPLGTALGGVVYGLCYMLVQTYL-SSWADLLPYVLLIVILLLRPSGLLGR 302 FAI ++G L NPLG LGG++ G+ L YL ++ +++ + +L+++L++RP GLLG+ Sbjct: 226 FAITIIGGLDNPLGVILGGLILGVIESLTVLYLGDTYRNVVSFSILVLVLIIRPGGLLGK 285 >YPO3807 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Ype Yersinia pestis Length = 308 Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/302 (27%), Positives = 156/302 (51%), Gaps = 21/302 (6%) Query: 8 GVLFGLYFSLVGIGLNLVFGVMRIVNLAHGDILMLGAFIALGVVG---IAGID-PLFAVP 63 G+ G ++L+ IG +V+G++ ++N AHG++ M+ ++++ V+ + GID + Sbjct: 15 GITLGSTYALIAIGYTMVYGIIGMINFAHGEVYMISSYVSFIVIAALMMVGIDASWLLIG 74 Query: 64 LAFVVFVLVGVLLYWVL--VPRLQGSANPEMLSIILFFGLSQVIEAVTTIFAGTSERSIQ 121 AF+V +++ W + V + ++++I G+S ++ ++ G+ + ++ Sbjct: 75 CAFLVSIVIASTYGWSIERVAYKPVRRSKRLIALISAIGMSIFLQNYVSLTQGSRDLALP 134 Query: 122 TRLLGTVFTTIKVKWFGGKAGGAGPIQIFGQGFPAPWVIAAITSLIAIALVYLYLYHTRL 181 + + G +W G++ G F + I + +A+ + L++ ++R+ Sbjct: 135 SLVTG--------QWTLGESNG------FAATISTMQLTIWIVTFLAMLALTLFIRYSRM 180 Query: 182 GTLTRAVMSRRDEALATGIDVDRVSAAAFGIGLGIAAVAGVFAPFMFGSVTPAFGADATV 241 G RA A GI+ DRV + F IG +AAVAGV +G + P G A + Sbjct: 181 GRACRACAEDLKMASLLGINTDRVISLTFVIGALMAAVAGVLLGQFYGVINPYIGFMAGM 240 Query: 242 TSFAIVVLGSLGNPLGTALGGVVYGLCYMLVQTYLSS-WADLLPYVLLIVILLLRPSGLL 300 +F VLG +G+ G +GG+V G+ L YLS+ + D + + LLIV+LL+ P+G+L Sbjct: 241 KAFTAAVLGGIGSIPGAMIGGLVLGVAEALTSAYLSTEYKDAVSFALLIVVLLVMPTGIL 300 Query: 301 GR 302 GR Sbjct: 301 GR 302 >FN1431 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Fnu Fusobacterium nucleatum Length = 308 Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 152/315 (48%), Gaps = 43/315 (13%) Query: 5 LVAGVLFGLYFSLVGIGLNLVFGVMRIVNLAHGDILMLGAFIALGVVGIAGIDPLFA--- 61 ++ G+ G ++LV +G +V+G+ +++N AHGDI+M+GA+ +L + PLF Sbjct: 20 IINGLQIGSIYALVSLGYTMVYGIAQLINFAHGDIIMIGAYTSLFSI------PLFTSMG 73 Query: 62 VPL------AFVVFVLVGVLLYWVLVPRLQGSANPEMLSIILFFGLSQVIEAV-TTIFAG 114 +P+ A ++ ++G L + L+ S P + ++I G+S IE V +F Sbjct: 74 LPIWTTVIPAIIICAVIGCLAERIAYRPLRNS--PRISNLITAIGVSLFIENVFMKVF-- 129 Query: 115 TSERSIQTRLLGTVFTTIKVKWFGGKAGGAGPIQIFGQGFPAPWVIAAITSLIAIAL--- 171 + TR +F PI FG G + AAIT L + L Sbjct: 130 ----TPNTRSFPKIFNQ-------------APIT-FGNGINISFG-AAITILTTVILSVG 170 Query: 172 VYLYLYHTRLGTLTRAVMSRRDEALATGIDVDRVSAAAFGIGLGIAAVAGVFAPFMFGSV 231 + L++ T+ G A + GI+VDR F IG G+AAV V + + Sbjct: 171 LQLFMKKTKYGKAMIATSQDYAASELVGINVDRTVQLTFAIGSGLAAVGSVLYVSAYPQI 230 Query: 232 TPAFGADATVTSFAIVVLGSLGNPLGTALGGVVYGLCYMLVQTYLSSW-ADLLPYVLLIV 290 P G+ + +F VLG +G G LGG + G+ L + YLSS AD + +LI+ Sbjct: 231 QPLMGSMLGIKAFIAAVLGGIGILPGAVLGGFILGIVESLTRAYLSSQLADAFVFSILII 290 Query: 291 ILLLRPSGLLGRRVR 305 +LL +P+G+LG+ V+ Sbjct: 291 VLLFKPTGILGKNVK 305 >SP0750 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Spn Streptococcus pneumoniae TIGR4 Length = 289 Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 33/312 (10%) Query: 1 MTYALVAGVLFGLYFSLVGIGLNLVFGVMRIVNLAHGDILMLGAFIALGVVGIAGIDPLF 60 M LV G++ G ++L+ +G +V+G+++++N AHGDI M+GAFI ++ ++ Sbjct: 1 MLQQLVNGLILGSVYALLALGYTMVYGIIKLINFAHGDIYMMGAFIGYFLINSFQMNFFV 60 Query: 61 AVPLAFVVFVLVGVLLYWVLVPRLQGSANPEML------SIILFFGLSQVIEAVTTIFAG 114 A+ +A + ++GV++ ++ L+ S +L S +L +G+ ++ A T F Sbjct: 61 ALIVAMLATAILGVVIEFLAYRPLRHSTRIAVLITAIGVSFLLEYGMVYLVGANTRAF-- 118 Query: 115 TSERSIQTRLLGTVFTTIKVKWFGGKAGGAGPIQIFGQGFPAPWVIAAITSLIAIALVYL 174 ++IQT V++ GPI + +I AI SLI + L+ + Sbjct: 119 --PQAIQT-----------VRY------DLGPISLTN----VQLMILAI-SLILMILLQV 154 Query: 175 YLYHTRLGTLTRAVMSRRDEALATGIDVDRVSAAAFGIGLGIAAVAGVFAPFMFGSVTPA 234 + T++G RAV D A GI+V+R + F +G +A AGV + S+ P Sbjct: 155 IVQKTKMGKAMRAVSVDSDAAQLMGINVNRTISFTFALGSALAGAAGVLIALYYNSLEPL 214 Query: 235 FGADATVTSFAIVVLGSLGNPLGTALGGVVYGLCYMLVQTY-LSSWADLLPYVLLIVILL 293 G + SF VLG +G G ALGG V GL + +S + D + Y +L++IL+ Sbjct: 215 MGVTPGLKSFVAAVLGGIGIIPGAALGGFVIGLLETFATAFGMSDFRDAIVYGILLLILI 274 Query: 294 LRPSGLLGRRVR 305 +RP+G+LG+ V+ Sbjct: 275 VRPAGILGKNVK 286