BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0011.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr4795 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...   127   1e-29
BMEII0133 [K] COG1846 Transcriptional regulators Bme Brucella me...   126   2e-29
RSc1592 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   103   1e-22
PA4135 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...    98   1e-20
NMB1843 [K] COG1846 Transcriptional regulators Nme Neisseria men...    84   1e-16

>mlr4795 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 167

 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 87/130 (66%)

Query: 29  RSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFLLGPSL 88
           RSLPM+LL ARE VM +FRP L  H +TEQQWR+LR L+    +E TELA  A +L PSL
Sbjct: 33  RSLPMALLHAREVVMARFRPMLAAHDVTEQQWRVLRVLSEAGPVEATELADRASVLPPSL 92

Query: 89  SRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRFGARKL 148
           +RI++ LEGR  I R  AE D RR V++I+  G  LI+A++P    IY +I RR G  KL
Sbjct: 93  TRIIKALEGRRFITRNKAEGDGRRVVLTIAPAGSALIDALSPERRVIYDDIERRLGHEKL 152

Query: 149 AELQEMLGAL 158
            +L ++L  L
Sbjct: 153 EQLLDLLEGL 162


>BMEII0133 [K] COG1846 Transcriptional regulators Bme Brucella melitensis
          Length = 163

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 83/124 (66%)

Query: 25  REFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFLL 84
           R   RS+P++LLRAREAVM  FRP L  H +TEQQWR++R L   D ++ +E+A  AF+L
Sbjct: 25  RNTRRSVPIALLRAREAVMSHFRPMLAQHDITEQQWRVIRILAETDIVDASEMAERAFIL 84

Query: 85  GPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRFG 144
            PSL+RI+R LE R +I +   END RR ++ I+  GL +I+ VAP S  IY  I  RFG
Sbjct: 85  APSLTRIIRSLEERGIITKTRDENDGRRVLLQITPAGLAIIKEVAPESRLIYQMIEERFG 144

Query: 145 ARKL 148
             ++
Sbjct: 145 RERI 148


>RSc1592 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 154

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 85/149 (57%), Gaps = 2/149 (1%)

Query: 29  RSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFLLGPSL 88
           R+LP  LLRARE +M +FRP LR HG+TEQQWR+LR L    ++E  +LA    +L PSL
Sbjct: 8   RNLPHLLLRARETLMARFRPILREHGITEQQWRVLRTLNDTGDMEPNQLADACLILSPSL 67

Query: 89  SRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRFGARKL 148
           +R+L  +E   +I R  +  D RR V+S++ K  + +  V P  +A YA I  + G  +L
Sbjct: 68  TRMLAAMEQADMIVRTRSSVDQRRQVISLTPKSRRFLADVEPQVDATYANIESQLGRPRL 127

Query: 149 AELQEMLGALEASLAGMGSADDAEVEADE 177
             L  ++   EA       A D  + AD+
Sbjct: 128 EALYRVID--EAIQLMEAPATDKRLPADD 154


>PA4135 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 140

 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 72/118 (61%)

Query: 30  SLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFLLGPSLS 89
           SL ++LL+AREA M  FRPSL  HGLTEQQWR++R L    E+E  +LA+ A +L PS++
Sbjct: 7   SLTLTLLQAREAAMSFFRPSLNQHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMT 66

Query: 90  RILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRFGARK 147
            +L  LE   ++ R  A  D RR  V+++ KG +   +++   E  Y  I  RFG  K
Sbjct: 67  GVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEK 124


>NMB1843 [K] COG1846 Transcriptional regulators Nme Neisseria meningitidis
           MC58
          Length = 146

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 70/126 (55%)

Query: 23  PMREFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAF 82
           P +    S+ + L++AREA+M QFRP L    +T+QQWRI+R L     ++  +LA+ A 
Sbjct: 2   PTQSKHASINIGLIQAREALMTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQAC 61

Query: 83  LLGPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRR 142
           +L PSL+ IL  LE   L+ R    ND RR  + ++A+G KL E +    +  Y  I   
Sbjct: 62  ILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEV 121

Query: 143 FGARKL 148
            G  K+
Sbjct: 122 LGREKM 127