BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0006.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 245 6e-65 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 242 5e-64 SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ... 236 4e-62 AF0822 [E] COG0410 ABC-type branched-chain amino acid transport ... 235 5e-62 alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 232 6e-61 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 245 bits (626), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 125/234 (53%), Positives = 169/234 (72%), Gaps = 2/234 (0%) Query: 3 LLEIRNLVVRYGEIEALRGVTIAVEQGQVVTLLGANGAGKSTTLRAISGLAKPASGDIMF 62 +LE+++L V YG I A++G+ + V +GQ+VTL+GANGAGK+TTL AI+GL + G I+F Sbjct: 5 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 64 Query: 63 DGHSIAGLGPEAIVRLGISHVPEGRRVFPGLTVKENIMLGASNRKVSASQISREADAMFD 122 +G I I R+GI+ VPEGRR+FP LTV EN+M+GA NRK I R+ + +F Sbjct: 65 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFS 123 Query: 123 LFPDIRAFSNALGWTLSGGQLQMVAVARGLMARPRLLLLDEPSLGLAPVIVQAVFRIISQ 182 LFP ++ LG TLSGG+ QM+A+ R LM+RP+LL++DEPSLGLAP++V VF +I + Sbjct: 124 LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 183 Query: 183 IRKD-TTVLLVEQNARMGLSVADHGFVLETGRIVLGGKPDELWGNEAIAAAYLG 235 I ++ TT+LLVEQNA L VA +G+VLETG+IVL GK EL NE + AYLG Sbjct: 184 INQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVRKAYLG 237 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 169/237 (71%), Gaps = 1/237 (0%) Query: 1 MPLLEIRNLVVRYGEIEALRGVTIAVEQGQVVTLLGANGAGKSTTLRAISGLAKPASGDI 60 M +LE+++L V Y I+AL+G+++ + +G+VV+++GANGAGK+TTL+ ISGL P SG I Sbjct: 1 MAMLEVKDLQVFYDNIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSI 60 Query: 61 MFDGHSIAGLGPEAIVRLGISHVPEGRRVFPGLTVKENIMLGASNRKVSASQISREADAM 120 +F+G ++ I +LGI+ VPEGRR+F L VK+N+ LG K SA + + Sbjct: 61 IFEGKNLLKEKAHNICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTVKDSAEKKEEDRANF 120 Query: 121 FDLFPDIRAFSNALGWTLSGGQLQMVAVARGLMARPRLLLLDEPSLGLAPVIVQAVFRII 180 + +FP + N L TLSGG+ QM+A+ R LM+RP+LL+LDEPS+GL+P+ V+ +F +I Sbjct: 121 YKVFPRMSERKNQLAGTLSGGEQQMLAMGRALMSRPKLLILDEPSMGLSPLFVKEIFEVI 180 Query: 181 SQIR-KDTTVLLVEQNARMGLSVADHGFVLETGRIVLGGKPDELWGNEAIAAAYLGG 236 Q++ K TT+LLVEQNA+M LS++D +V+ETG IVL GK ++L N+ + AYLGG Sbjct: 181 KQLKEKGTTILLVEQNAKMALSISDRAYVIETGEIVLEGKAEDLLYNDRVKKAYLGG 237 >SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 236 Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 8/240 (3%) Query: 1 MPLLEIRNLVVRYGEIEALRGVTIAVEQGQVVTLLGANGAGKSTTLRAISGLAKPASGDI 60 M +L++ NL V YG I+A+R V+ V +G+VV+L+GANGAGK+T LR +SGL +P+SG I Sbjct: 1 MSMLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKI 60 Query: 61 MFDGHSIAGLGPEAIVRLGISHVPEGRRVFPGLTVKENIMLGA---SNRKVSASQISREA 117 F G I + + IV G+S VPEGR VFPGLTV EN+ +GA NR+ + + + + Sbjct: 61 EFLGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKK-- 118 Query: 118 DAMFDLFPDIRAFSNALGWTLSGGQLQMVAVARGLMARPRLLLLDEPSLGLAPVIVQAVF 177 +F FP + N TLSGG+ QM+A+ R LM+ P+LLLLDEPS+GLAP+ +Q +F Sbjct: 119 --VFSRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIF 176 Query: 178 RIISQIRKD-TTVLLVEQNARMGLSVADHGFVLETGRIVLGGKPDELWGNEAIAAAYLGG 236 II I+K TTVLL+EQNA L+++D G+VLETGRIVL G EL +E + AYLGG Sbjct: 177 DIIQDIQKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGKELASSEEVRKAYLGG 236 >AF0822 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Afu Archaeoglobus fulgidus Length = 238 Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 160/233 (68%) Query: 3 LLEIRNLVVRYGEIEALRGVTIAVEQGQVVTLLGANGAGKSTTLRAISGLAKPASGDIMF 62 L E+++L V YG E LRGV + V++G++V+++G+NGAGKST R ISGL KP SG I+F Sbjct: 5 LFEVKDLHVAYGSYEVLRGVNLEVDRGEIVSIIGSNGAGKSTLFRTISGLIKPRSGRIIF 64 Query: 63 DGHSIAGLGPEAIVRLGISHVPEGRRVFPGLTVKENIMLGASNRKVSASQISREADAMFD 122 +G IAG PE IV +GI+H PEGR +FP L+V +N++LG ++ + +F+ Sbjct: 65 EGEDIAGKSPEEIVSIGITHCPEGRFLFPELSVYKNLLLGYYTKRKDKKGFKERLEYVFE 124 Query: 123 LFPDIRAFSNALGWTLSGGQLQMVAVARGLMARPRLLLLDEPSLGLAPVIVQAVFRIISQ 182 +FP ++ N T+SGG+ QM+A+AR LM P+LLLLDEPSLGL+P + +VF ++ + Sbjct: 125 IFPVLKERINQRAGTMSGGEQQMLAIARALMPSPKLLLLDEPSLGLSPKLSWSVFEVLKE 184 Query: 183 IRKDTTVLLVEQNARMGLSVADHGFVLETGRIVLGGKPDELWGNEAIAAAYLG 235 I+KDT +L+ EQNA + L V+D +V+E G I L GK DE+ N + AYLG Sbjct: 185 IKKDTAILVSEQNASLCLKVSDRTYVMELGEIRLSGKADEVLANPEVKRAYLG 237 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 232 bits (591), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 118/234 (50%), Positives = 160/234 (68%), Gaps = 2/234 (0%) Query: 3 LLEIRNLVVRYGEIEALRGVTIAVEQGQVVTLLGANGAGKSTTLRAISGLAKPASGDIMF 62 +LEI+ L V YG I+AL+ + + +++G+VVTL+GANGAGKSTTLRAIS + P +G I++ Sbjct: 32 ILEIQELDVNYGGIQALKKINLTIQKGEVVTLIGANGAGKSTTLRAISKIVTPKNGQIIY 91 Query: 63 DGHSIAGLGPEAIVRLGISHVPEGRRVFPGLTVKENIMLGASNRKVSASQISREADAMFD 122 G +I P +V+ GI+H PEGRRV TV +N++LGA R + ++I + F+ Sbjct: 92 SGRNITRRLPHEVVKFGIAHCPEGRRVLAKQTVLDNLLLGAYIRS-NQTEIKADIKQQFE 150 Query: 123 LFPDIRAFSNALGWTLSGGQLQMVAVARGLMARPRLLLLDEPSLGLAPVIVQAVFRIISQ 182 LFP + N L TLSGG+ QM+A+AR LM+RP+LLLLDEPSLGLAP IV+ +F II Sbjct: 151 LFPRLAQRQNQLAGTLSGGEQQMLAIARALMSRPQLLLLDEPSLGLAPAIVREIFSIIEN 210 Query: 183 IRKD-TTVLLVEQNARMGLSVADHGFVLETGRIVLGGKPDELWGNEAIAAAYLG 235 +R T+LLVEQNA + L +AD G+VLE G I L G L +E + AYLG Sbjct: 211 LRATGVTILLVEQNANLALQIADRGYVLEAGSITLSGAASNLINDERVKKAYLG 264