BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0012.p         (217 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0052 [GEPR] COG0477 Permeases of the major facilitator superf...   191   2e-48
PA3467 [GEPR] COG0477 Permeases of the major facilitator superfa...   177   1e-44
Cgl2919 [GEPR] COG0477 Permeases of the major facilitator superf...   123   2e-28
BS_yceI [GEPR] COG0477 Permeases of the major facilitator superf...   113   3e-25
DRA0271 [GEPR] COG0477 Permeases of the major facilitator superf...   106   4e-23

>RSp0052 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 476

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 120/166 (72%), Gaps = 13/166 (7%)

Query: 2   TGLRTLFSGIYAKRTTMLWTLWFFALLGFYGLTTWLGALLQAKGFPITKSVFYTILISL- 60
           + LR ++S  Y +RTTM+W LWFFALLGFYGLT+WLGALLQ  GF +T+SV+YT+LISL 
Sbjct: 254 SALREIWSAAYRRRTTMVWLLWFFALLGFYGLTSWLGALLQQAGFAVTQSVYYTVLISLG 313

Query: 61  --------AXLVESWGRKATLVMNLLCGAIACHFYGSAA----DQTQLIIAGLCMQFFLF 108
                   A LVE WGRK T + +LL G    + YG +A      T LI  GL MQFFLF
Sbjct: 314 GVPGFLCAAWLVERWGRKPTCIASLLGGGAMAYLYGQSALYGGSVTLLICTGLAMQFFLF 373

Query: 109 GMWSALYAYTPELYPTHVRATGTGFASAVGRIGSLIGPYVIGVILP 154
           GMW+ LY YTPE Y T  RATG+GFASA+GR+GSLIGPYV+GV+LP
Sbjct: 374 GMWAVLYTYTPEQYGTGARATGSGFASAIGRVGSLIGPYVVGVVLP 419


>PA3467 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 455

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 113/161 (70%), Gaps = 13/161 (8%)

Query: 7   LFSGIYAKRTTMLWTLWFFALLGFYGLTTWLGALLQAKGFPITKSVFYTILISLAX---- 62
           L+S  Y +RT  +W LWFFALLGFYGLT+WL ALLQ  GF +T+SV+YT+LISLA     
Sbjct: 256 LWSPAYRRRTLTVWGLWFFALLGFYGLTSWLSALLQQSGFAVTQSVYYTVLISLAGIPGF 315

Query: 63  -----LVESWGRKATLVMNLLCGAIACHFYGSAA----DQTQLIIAGLCMQFFLFGMWSA 113
                LVESWGRK + V+ LL G    + YG  A        LI  GL MQFFLFGMW+ 
Sbjct: 316 LCAAWLVESWGRKPSCVLMLLGGGAMAYAYGQTAVFGGSLALLIGFGLAMQFFLFGMWAV 375

Query: 114 LYAYTPELYPTHVRATGTGFASAVGRIGSLIGPYVIGVILP 154
           LY YTPELYPT  RATG+GFASAVGRIGSL+GP V G++LP
Sbjct: 376 LYTYTPELYPTSARATGSGFASAVGRIGSLLGPLVTGLVLP 416


>Cgl2919 [GEPR] COG0477 Permeases of the major facilitator superfamily Cgl
           Corynebacterium glutamicum
          Length = 439

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 94/156 (60%), Gaps = 9/156 (5%)

Query: 3   GLRTLFSGIYAKRTTMLWTLWFFALLGFYGLTTWLGALLQAKGFPITKSVFYTILISLAX 62
           G  +++S    KRT  LW +WF   L +YG   W+ +LL A GF + KS  +T++I+LA 
Sbjct: 244 GSVSIWSAALRKRTVALWIVWFCINLSYYGAFIWIPSLLVADGFTLVKSFQFTLIITLAQ 303

Query: 63  L---------VESWGRKATLVMNLLCGAIACHFYGSAADQTQLIIAGLCMQFFLFGMWSA 113
           L         +E WGR++TL   L+  AI+   YG A  + Q+++AG  + FF  G W A
Sbjct: 304 LPGYAVAAWLIEKWGRRSTLATFLVGSAISAALYGLANVEWQILVAGCLLSFFNLGAWGA 363

Query: 114 LYAYTPELYPTHVRATGTGFASAVGRIGSLIGPYVI 149
           LYA  PELYPT+VR TGTG A+  GRI S+I P ++
Sbjct: 364 LYAIGPELYPTNVRGTGTGAAAGFGRIASIIAPLIV 399


>BS_yceI [GEPR] COG0477 Permeases of the major facilitator superfamily Bsu
           Bacillus subtilis
          Length = 400

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 91/150 (60%), Gaps = 9/150 (6%)

Query: 12  YAKRTTMLWTLWFFALLGFYGLTTWLGALLQAKGFPITKSVFYTILISLAXL-------- 63
           Y + T ML  +WF  +  +YG+  WL +++  KGF + +S  Y +L++LA L        
Sbjct: 213 YIRPTVMLSIVWFCVVFSYYGMFLWLPSVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAW 272

Query: 64  -VESWGRKATLVMNLLCGAIACHFYGSAADQTQLIIAGLCMQFFLFGMWSALYAYTPELY 122
            +E  GRK  LV+ L+  A + +F+G+A   + L+ AG+ + FF  G W  LYAYTPE Y
Sbjct: 273 LIEKAGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLSFFNLGAWGVLYAYTPEQY 332

Query: 123 PTHVRATGTGFASAVGRIGSLIGPYVIGVI 152
           PT +RATG+G  +A GRIG + GP ++G +
Sbjct: 333 PTAIRATGSGTTAAFGRIGGIFGPLLVGTL 362


>DRA0271 [GEPR] COG0477 Permeases of the major facilitator superfamily Dra
           Deinococcus radiodurans
          Length = 454

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 9/156 (5%)

Query: 7   LFSGIYAKRTTMLWTLWFFALLGFYGLTTWLGALLQAKGFPITKSVFYTILISLAX---- 62
           LF G+ A+RT +L   WF   LG+YG+ +WL + L+A+G  +      T+L++LA     
Sbjct: 260 LFRGVLARRTPLLMVTWFGLSLGYYGIFSWLPSFLRAQGLDLGAVYRSTLLLALAQVPGY 319

Query: 63  -----LVESWGRKATLVMNLLCGAIACHFYGSAADQTQLIIAGLCMQFFLFGMWSALYAY 117
                LVE  GR+ TLV  L  GA+  + +  A D   +++    + F L G W +LYAY
Sbjct: 320 LLAAYLVEKIGRRVTLVGFLTLGAVGAYLFLLAHDANTVLLTSALLSFALLGAWGSLYAY 379

Query: 118 TPELYPTHVRATGTGFASAVGRIGSLIGPYVIGVIL 153
           TPEL+PT +R TG G  S V R+ S++ P +  ++L
Sbjct: 380 TPELFPTPLRTTGMGLVSGVARLASVVSPSIGAMLL 415