BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0011.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0052 [GEPR] COG0477 Permeases of the major facilitator superf...   190   2e-48
PA3467 [GEPR] COG0477 Permeases of the major facilitator superfa...   187   7e-48
Cgl2919 [GEPR] COG0477 Permeases of the major facilitator superf...   119   3e-27
TVN0436 [GEPR] COG0477 Permeases of the major facilitator superf...   111   7e-25
Ta0334 [GEPR] COG0477 Permeases of the major facilitator superfa...   108   8e-24

>RSp0052 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 476

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 119/169 (70%)

Query: 2   SFLGMFAGAASAGLLADRFGRARVFQVSMIFWGLGSLCCGLSTTATALGASRLLLGFGMG 61
           SF GM  GAA AGLLADRFGR  VFQ SM+ WG+ S  C  + +  AL A R+LLG GMG
Sbjct: 72  SFFGMVIGAAVAGLLADRFGRRPVFQWSMVLWGVASYLCSTAQSVEALIAWRILLGIGMG 131

Query: 62  MEFPVAQSMVSEIMPARNRGRYIAFLEGFWPLGFIASGLLTYFVLQVADWRWVFILQAIP 121
           MEFPVAQ+++SE +P  NRGR IA ++GFWPLGFI +G+++YFVL    WR VF L A+P
Sbjct: 132 MEFPVAQTLLSEFVPTANRGRLIALMDGFWPLGFITAGIVSYFVLPQFGWRAVFALLAVP 191

Query: 122 AVFVLVVRRFVPESPRWLASHGYSERAEATVRKIESRVRDRKKKXRPPP 170
           A+FVL+VRR VPESPRWL   G + +A+  +R IE++V         PP
Sbjct: 192 AIFVLIVRRAVPESPRWLEHAGRNAQADTVMRGIEAKVMRSLNTTTLPP 240


>PA3467 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 455

 Score =  187 bits (476), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/170 (52%), Positives = 120/170 (70%)

Query: 2   SFLGMFAGAASAGLLADRFGRARVFQVSMIFWGLGSLCCGLSTTATALGASRLLLGFGMG 61
           SF GM  GAA +G+LADRFGR  VFQ S++ WGL S  C  +    +L   R+LLG GMG
Sbjct: 67  SFFGMVIGAALSGMLADRFGRKPVFQASIVLWGLASYLCSTAGDLDSLTFYRVLLGIGMG 126

Query: 62  MEFPVAQSMVSEIMPARNRGRYIAFLEGFWPLGFIASGLLTYFVLQVADWRWVFILQAIP 121
           MEFP+AQS++SE++PA  RG+YIA ++GFWPLGF+A+G L+YF+L +  WR +F++ A+P
Sbjct: 127 MEFPIAQSLLSEMIPASRRGKYIALMDGFWPLGFVAAGCLSYFLLPLTGWRSIFLVLALP 186

Query: 122 AVFVLVVRRFVPESPRWLASHGYSERAEATVRKIESRVRDRKKKXRPPPP 171
           AVFVL +R  +PESPRWL   G  E+A+  +R IE+RV         PPP
Sbjct: 187 AVFVLAIRFLIPESPRWLEQAGRREQADRVLRDIEARVMRSLGLTELPPP 236


>Cgl2919 [GEPR] COG0477 Permeases of the major facilitator superfamily Cgl
           Corynebacterium glutamicum
          Length = 439

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 95/154 (61%), Gaps = 2/154 (1%)

Query: 1   MSFLGMFAGAASAGLLADRFGRARVFQVSMIFWGLGSLCCGLSTTATALGASRLLLGFGM 60
           + F+GM  GA+  GLLAD+ GR +VF +S++ +G+ +    LS +   L A R ++G G+
Sbjct: 63  IGFVGMAIGASLGGLLADKLGRRQVFALSLLVYGVATGASALSVSLAMLMALRFVVGLGL 122

Query: 61  GMEFPVAQSMVSEIMPARNRGRYIAFLEGFWPLGFIASGLLTYFVLQVAD--WRWVFILQ 118
           G E PVA +++SE  P + RGR +  LE FW LG+I + ++  FV+  +D  WRW   L 
Sbjct: 123 GAELPVASTLISEFSPRKVRGRMVVILEAFWALGWIMAAIVGTFVVAGSDNGWRWALALG 182

Query: 119 AIPAVFVLVVRRFVPESPRWLASHGYSERAEATV 152
            +PA++ + VR  +PES R+L   G  + AEA V
Sbjct: 183 CVPAIYAVYVRLGLPESVRFLEKKGRHDEAEAIV 216


>TVN0436 [GEPR] COG0477 Permeases of the major facilitator superfamily Tvo
           Thermoplasma volcanium
          Length = 445

 Score =  111 bits (278), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 96/164 (58%), Gaps = 1/164 (0%)

Query: 2   SFLGMFAGAASAGLLADRFGRARVFQVSMIFWGLGSLCCGLSTTATALGASRLLLGFGMG 61
           +F+GM  GA   G L+DR GR ++F + ++ + + ++  GL+T    L  SRL+LG G+G
Sbjct: 62  AFIGMIIGAPLLGRLSDRIGRKKIFGIDLLLFVVFAITAGLATNFAMLFISRLMLGIGIG 121

Query: 62  MEFPVAQSMVSEIMPARNRGRYIAFLEGFWPLGFIASGLLTY-FVLQVADWRWVFILQAI 120
            ++P++ +MVSE  P   RG  +  + G + LG   S ++ Y F      WR+ FI+  +
Sbjct: 122 GDYPISSTMVSEFSPVSKRGTLLYGMVGMYWLGSFFSAVMNYTFAFTPYFWRYTFIVGGV 181

Query: 121 PAVFVLVVRRFVPESPRWLASHGYSERAEATVRKIESRVRDRKK 164
            A+ ++ +R  +PESPRWL  HG ++ AE+ V  +  R  D ++
Sbjct: 182 IAIPIIFLRMRIPESPRWLIGHGMTKSAESVVEDLTGRKPDVEE 225


>Ta0334 [GEPR] COG0477 Permeases of the major facilitator superfamily Tac
           Thermoplasma acidophilum
          Length = 445

 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 1/161 (0%)

Query: 5   GMFAGAASAGLLADRFGRARVFQVSMIFWGLGSLCCGLSTTATALGASRLLLGFGMGMEF 64
           GM  GA   G L+DR GR ++F + +I + + ++  GL+T    +  SR +LG G+G ++
Sbjct: 65  GMIVGAPLLGRLSDRIGRKKIFDIDLILFVVFAITAGLATNFWMMFISRFMLGVGIGGDY 124

Query: 65  PVAQSMVSEIMPARNRGRYIAFLEGFWPLGFIASGLLTY-FVLQVADWRWVFILQAIPAV 123
           P++ ++VSE  P + RG  +  + G + LG + SG++ Y F      WR+ FI+  I A+
Sbjct: 125 PISSTIVSEFAPVKRRGTLLYAMVGMYWLGSLFSGIMNYTFAFTYYFWRYTFIIGGIVAI 184

Query: 124 FVLVVRRFVPESPRWLASHGYSERAEATVRKIESRVRDRKK 164
            ++ +R  +PESPRWL S G ++ A   +  I  +  D  +
Sbjct: 185 PIISLRMQIPESPRWLVSQGRADEASKVIENITGKEPDLNE 225