BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0063.0008.p (264 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4980 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae P... 139 5e-33 CC1851 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr C... 138 1e-32 SMb21633 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Sme... 136 5e-32 APE1484_2 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ap... 135 7e-32 CC2575 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr C... 134 3e-31 >PA4980 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Pae Pseudomonas aeruginosa Length = 263 Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 110/270 (40%), Positives = 143/270 (52%), Gaps = 13/270 (4%) Query: 1 MIDKGPVLLDITDGIARLRLNRPDAANGMSAELLRALCDAIMVCHGHPDLRVVLLSGEGT 60 M D P+ + GIA L LNRP N + L AL + C P +R V+L G G Sbjct: 1 MTDLSPLQTRVEAGIAWLVLNRPQQRNALDIPTLEALHVRLDACERDPAVRAVVLGGSGR 60 Query: 61 NFCAGGDVRAFAA---KGEKLPDYIRQATAYLQNAVIGLLR-LEAPVISSVQGFAAGGGG 116 +FCAG D+ +AA +GE L Y A+ A++G L L+ P +++V G A G G Sbjct: 61 SFCAGADLAEWAAAEARGE-LESYGWTEAAH---ALMGRLHALDKPTVAAVNGSAVGAG- 115 Query: 117 FGLVCASDIVIAAESAKFLAGATRVAMAPDAGVSVTLSRLVGLRRAMSILLTNPVIPAAE 176 L D IAA SA+F AG T +A PDAG S L RL+G A +L + A Sbjct: 116 MDLALCCDFRIAAASARFKAGYTGMAYCPDAGASWHLPRLLGSEAAKRLLFLDEAWSAER 175 Query: 177 ALQMGIVTKVVPDAELAEASLALARELAAGAPKALAATKRLVWAGTGTSI-EQCLSEEAR 235 AL G+V +VV D L EA A A LA+G A A TKRL+ G G S+ EQ +E+A Sbjct: 176 ALGAGLVGEVVADEHLVEAVGAFAARLASGPTFAFAQTKRLLRDGAGRSLAEQLRAEQAA 235 Query: 236 TVAELSGMA-DAREGLAAVIERRQPVFTGR 264 + L G + DA E L AV E+R P F+GR Sbjct: 236 GL--LCGRSEDAAEALRAVAEKRSPQFSGR 263 >CC1851 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr Caulobacter vibrioides Length = 267 Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/270 (35%), Positives = 139/270 (51%), Gaps = 10/270 (3%) Query: 2 IDKGPVLLDITDGIARLRLNRPDAANGMSAELLRALCDAIM-VCHGHPDLRVVLLSGEGT 60 +D + + DG+A + L P N S E+ R L A + G + R V+L+GEG Sbjct: 1 MDYQKIRVSTQDGVATVTLADPTTLNAASPEVARELHHAFSSIAAGKIEARAVILTGEGR 60 Query: 61 NFCAGGDVRAFAAKGEKL-----PDYIRQATAYLQNAVIGLLR-LEAPVISSVQGFAAGG 114 FC+G ++ A G + PD A + N ++ LLR P++++V G AAG Sbjct: 61 GFCSGANLSGGGAAGREADVDGKPD-AGSALETVYNPLMTLLRDFPLPIVTAVNGPAAGV 119 Query: 115 GGFGLVCASDIVIAAESAKFLAGATRVAMAPDAGVSVTLSRLVGLRRAMSILLTNPVIPA 174 G + D+++AAESA FL R+ + PD G + L RL+G RAM ++L IPA Sbjct: 120 G-CSIALMGDLIVAAESAYFLQAFRRIGLVPDGGSTYLLPRLIGKARAMEMMLLGDKIPA 178 Query: 175 AEALQMGIVTKVVPDAELAEASLALARELAAGAPKALAATKRLVWAGTGTSIEQCLSEEA 234 A ALQ G+V + VPDAEL + ALA ELA G P AL ++LVW + L E Sbjct: 179 ATALQWGLVNRCVPDAELMVTAHALALELAKG-PAALGVIRKLVWDSLDSDWTGQLHAER 237 Query: 235 RTVAELSGMADAREGLAAVIERRQPVFTGR 264 + D EG+ A +++R VF GR Sbjct: 238 KAQKIAGKTEDFIEGVTAFLQKRAAVFKGR 267 >SMb21633 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Sme Sinorhizobium meliloti Length = 263 Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 136/265 (51%), Gaps = 3/265 (1%) Query: 1 MIDKGPVLLDITDGIARLRLNRPDAANGMSAELLRALCDAIMVCHGHPDLRVVLLSGEGT 60 M D VL + G+ RL LNRPD N + E+ AL D+R V+L+G G Sbjct: 1 MPDSDTVLSALEAGVLRLTLNRPDKLNAFNEEMHLALRAGFERARSDDDVRAVMLTGAGR 60 Query: 61 NFCAGGDVRAFAAKGEKLPDYIRQATAYLQNAVIGLLR-LEAPVISSVQGFAAGGGGFGL 119 F AG D+ + PD R + N ++ L+R LE PV+ +V G AAG G + Sbjct: 61 GFSAGQDLGDRDPRKGGAPDLGRTIETFY-NPLLRLIRSLEKPVVCAVNGVAAGAGA-NI 118 Query: 120 VCASDIVIAAESAKFLAGATRVAMAPDAGVSVTLSRLVGLRRAMSILLTNPVIPAAEALQ 179 A DI +AA SA+F+ ++ + PD+G + +L RLVG RA ++ +T + A A Sbjct: 119 AFACDITLAARSARFIQAFAKIGLVPDSGGTWSLPRLVGEARAKALAMTAEPLDAETAAS 178 Query: 180 MGIVTKVVPDAELAEASLALARELAAGAPKALAATKRLVWAGTGTSIEQCLSEEARTVAE 239 G++ + V DA L + + ALA LAAG + L TKR + A S ++ L E E Sbjct: 179 WGLIWRAVDDAALMDEASALAVRLAAGPTRGLGLTKRAIQAAATHSFDEQLDLERDLQRE 238 Query: 240 LSGMADAREGLAAVIERRQPVFTGR 264 AD EG+ A +++R P F GR Sbjct: 239 AGRSADYAEGVTAFLDKRNPEFRGR 263 >APE1484_2 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ape Aeropyrum pernix Length = 257 Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 4/258 (1%) Query: 7 VLLDITDGIARLRLNRPDAANGMSAELLRALCDAIMVCHGHPDLRVVLLSGEGTNFCAGG 66 +L+ + IA + LNRPD N +S +++ L A+ D+R V+L+G G F AG Sbjct: 4 LLVRVEKPIAWIVLNRPDKLNAISPKMIMELSQALDELEERSDVRAVILTGAGRAFSAGA 63 Query: 67 DVRAFAAKGEKLPDYIRQATAYLQNAVIGLLRLEAPVISSVQGFAAGGGGFGLVCASDIV 126 DV AFA + P I + + Q + + PVI +++G+A GGG L + DI Sbjct: 64 DVTAFA---QVTPIDILRFSRKFQELTLKIQFYTKPVIVAIKGYALGGG-LELAMSGDIR 119 Query: 127 IAAESAKFLAGATRVAMAPDAGVSVTLSRLVGLRRAMSILLTNPVIPAAEALQMGIVTKV 186 IA+E A + P AG + L+RL G RA +++T +IPA++A +MGIV +V Sbjct: 120 IASEDAMLGQPEINLGFIPGAGGTQRLARLAGPARAKELIMTGDMIPASDAEKMGIVNRV 179 Query: 187 VPDAELAEASLALARELAAGAPKALAATKRLVWAGTGTSIEQCLSEEARTVAELSGMADA 246 VP L + + +LA +LA P ALAA K + G ++I L EA + L D Sbjct: 180 VPPELLEQEASSLALKLAEKPPIALAAAKYAIDFGLESNIWAGLQLEASLFSVLFSTEDV 239 Query: 247 REGLAAVIERRQPVFTGR 264 EG+ A +E+R+P F GR Sbjct: 240 IEGVTAFLEKRKPKFKGR 257 >CC2575 [I] COG1024 Enoyl-CoA hydratase/carnithine racemase Ccr Caulobacter vibrioides Length = 265 Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 18/260 (6%) Query: 15 IARLRLNRPDAANGMSA----ELLRALCDAIMVCHGHPDLRVVLLSGEGTNFCAGGDVRA 70 IA L LNRPDA N + A + + A C+AI + D+R V+L+G G F AGGDV+A Sbjct: 12 IAILTLNRPDAMNALGAPGDGDQVAAACEAI---NDDQDIRCVILTGAGKAFSAGGDVKA 68 Query: 71 -------FAAKGEKLPDYIRQATAYLQNAVIGLLRLEAPVISSVQGFAAGGGGFGLVCAS 123 F G K+ D R+ + A+ GL E P I++V G AA G G + C + Sbjct: 69 MKAREGAFGGNGVKVRDGYRKNIHRIVRAIYGL---EVPSIAAVNG-AAIGLGCDVACMT 124 Query: 124 DIVIAAESAKFLAGATRVAMAPDAGVSVTLSRLVGLRRAMSILLTNPVIPAAEALQMGIV 183 DI IAA++A+F ++ + P G + + R +G+ RA +L T VI AA+A + G++ Sbjct: 125 DIRIAADTARFGVTFLKLGLIPGDGGAWLMPRTIGMSRAAELLFTGDVIDAAKAAEWGLI 184 Query: 184 TKVVPDAELAEASLALARELAAGAPKALAATKRLVWAGTGTSIEQCLSEEARTVAELSGM 243 +K VP +L +LALA +A P AL K L+ G S + + A A Sbjct: 185 SKAVPAGDLMGEALALAERIAQQPPHALRMAKSLLKHGQTASYDTLMEMSAAAQAIAHHT 244 Query: 244 ADAREGLAAVIERRQPVFTG 263 D EG+ A++E+R PVF G Sbjct: 245 EDHMEGVDAILEKRSPVFKG 264