BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0023.p         (217 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2376 [K] COG1309 Transcriptional regulator Dra Deinococcus rad...    64   3e-10
Rv3557c [K] COG1309 Transcriptional regulator Mtu Mycobacterium ...    61   2e-09
MT3661 [K] COG1309 Transcriptional regulator MtC Mycobacterium t...    61   2e-09
XF2085 [K] COG1309 Transcriptional regulator Xfa Xylella fastidi...    60   3e-09

>DR2376 [K] COG1309 Transcriptional regulator Dra Deinococcus radiodurans
          Length = 197

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 5/168 (2%)

Query: 12  QRSRDRREQILTAATKLFGEKGIDGTSLTEVAAAAKVPLSSIYDYFEDKRALVLDVPEGN 71
           + ++ RREQI   A++LF E+G   TS+ ++A    +   S+Y +   K  L++++  G 
Sbjct: 3   ETTKPRREQIHDVASRLFSERGYHATSMRDLAGQLGMQGGSLYAHISGKEELLVEIVRGA 62

Query: 72  FEALYQKTEPLLVKGGDPVEQLRIIFLTNFQYIKDNPSWGRVFFLEIWPSVLAAEPRIKK 131
            +   +    L        E+LR     + Q + DN     VFF E W   L+AEP  + 
Sbjct: 63  SQQFDEALFSLRDVNLPADEKLREAMFRHIQVVADNMDSATVFFHE-WKH-LSAEPYAQV 120

Query: 132 AV--DRYALRYVQLIRQASRAGTYRRNLDPYTAMSLMMGGMCHLTAVW 177
               D   + Y  L+ Q  R GT+R +LD   A +L++    + T  W
Sbjct: 121 VAWRDTIDIFYRDLVAQGVRDGTFRADLDVRAAANLILSA-VNWTYTW 167


>Rv3557c [K] COG1309 Transcriptional regulator Mtu Mycobacterium
           tuberculosis H37Rv
          Length = 200

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query: 17  RREQILTAATKLFGEKGIDGTSLTEVAAAAKVPLSSIYDYFEDKRALVLDVPEGNFEALY 76
           RR ++L  A  +F E+G+  T++ ++A  A +   S+Y +F  K  +V ++  G  + L+
Sbjct: 11  RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF 70

Query: 77  QKTEPLLVKGGDPVEQLRIIFLTNFQYIKDNPSWGRVFFLEIWPSVLAAEPRIKKAVDRY 136
            +   ++    +P+E+L+ +F+ +F+ I+ + +  +V   +     LA++PR     DR 
Sbjct: 71  ARYRDIVDSTANPLERLQGLFMASFEAIEHHHA--QVVIYQDEAQRLASQPRFSYIEDRN 128

Query: 137 ALR---YVQLIRQASRAGTYRRNLD 158
             +   +V ++ Q    G +R +LD
Sbjct: 129 KQQRKMWVDVLNQGIEEGYFRPDLD 153


>MT3661 [K] COG1309 Transcriptional regulator MtC Mycobacterium
           tuberculosis CDC1551
          Length = 200

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 77/145 (53%), Gaps = 5/145 (3%)

Query: 17  RREQILTAATKLFGEKGIDGTSLTEVAAAAKVPLSSIYDYFEDKRALVLDVPEGNFEALY 76
           RR ++L  A  +F E+G+  T++ ++A  A +   S+Y +F  K  +V ++  G  + L+
Sbjct: 11  RRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLF 70

Query: 77  QKTEPLLVKGGDPVEQLRIIFLTNFQYIKDNPSWGRVFFLEIWPSVLAAEPRIKKAVDRY 136
            +   ++    +P+E+L+ +F+ +F+ I+ + +  +V   +     LA++PR     DR 
Sbjct: 71  ARYRDIVDSTANPLERLQGLFMASFEAIEHHHA--QVVIYQDEAQRLASQPRFSYIEDRN 128

Query: 137 ALR---YVQLIRQASRAGTYRRNLD 158
             +   +V ++ Q    G +R +LD
Sbjct: 129 KQQRKMWVDVLNQGIEEGYFRPDLD 153


>XF2085 [K] COG1309 Transcriptional regulator Xfa Xylella fastidiosa 9a5c
          Length = 205

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 8   KLKQQRSRDRREQILTAATKLFGEKGIDGTSLTEVAAAAKVPLSSIYDYFEDKRALVLDV 67
           +L+Q +  D R+QI+ AAT+ FG  G + T+++++A A     + IY +F+ K+A+   +
Sbjct: 10  QLRQPQDHDVRDQIVKAATEYFGRYGYEKTTVSDLAKAIGFSKAYIYRFFDSKQAIGEVI 69

Query: 68  PEGNFEALYQKTEPLLVKGGDPVEQLRIIFLT-----NFQYIKDNPSW--GRVFFLEIWP 120
                  +    +  +     P EQLR +F T     N+ +  D   +        E WP
Sbjct: 70  CSNRLSIIITSVDEAVANASTPPEQLRRMFKTLVEAGNYLFFHDRKLYDIAATSISESWP 129

Query: 121 SVLAAEPRIKKAVDRYALRYVQLIRQASRAGTYRR 155
           SV   E  +K  V       +Q++R    +G + R
Sbjct: 130 SVGVYEDHLKALV-------LQIVRDGRESGEFER 157