BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0010.p         (128 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2712 [D] COG0239 Integral membrane protein possibly involved ...   110   7e-25
CC1981 Non COG                                                        108   2e-24
SMc01274 [D] COG0239 Integral membrane protein possibly involved...   102   2e-22
mlr0333 [D] COG0239 Integral membrane protein possibly involved ...    90   1e-18
lin2187 [D] COG0239 Integral membrane protein possibly involved ...    68   5e-12

>AGc2712 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 125

 Score =  110 bits (275), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 82/119 (68%)

Query: 9   LVFFGGGLGATLRQLINVTCARCIGTAFPYGTFIINITGSTVMGLIAGYLAFRGDASQPW 68
           LV  GG +G+  R L+ V   R  G  FP+GT  +NI GS ++GL+   +A R +AS   
Sbjct: 6   LVATGGAIGSVFRYLVGVWSMRLAGPNFPWGTLAVNIVGSFLIGLLVELVARRLNASIEM 65

Query: 69  RLFLMTGILGGYTTFSAFSLDTALLYERGELGLAVLYVAGSVALSIAGLFAGLAIVRHL 127
           RLFL+TG+LGG+TTFS+FSLD   L+ERG LGL+  Y+  S+ +SIA +FAGLA+ R+L
Sbjct: 66  RLFLVTGVLGGFTTFSSFSLDAVSLFERGALGLSAFYILASLVVSIAAVFAGLALGRNL 124


>CC1981 Non COG
          Length = 127

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 82/121 (67%), Gaps = 1/121 (0%)

Query: 8   LLVFFGGGLGATLRQLINVTCARCIGTAFPYGTFIINITGSTVMGLIAGYLAFRGD-ASQ 66
           LLV  GG +G+  R L+ V   R +G  +PYGTF +N+ G  +MG +A +LA RG+ +S+
Sbjct: 5   LLVAAGGAVGSVARYLVGVGAMRVMGPGWPYGTFTVNVVGGFLMGCLASWLAHRGNTSSE 64

Query: 67  PWRLFLMTGILGGYTTFSAFSLDTALLYERGELGLAVLYVAGSVALSIAGLFAGLAIVRH 126
            WR+ L  G+LGG+TTFS+FSL+TAL+ ++   G A  Y A SV L+IA LFAGL + R 
Sbjct: 65  TWRVMLGVGVLGGFTTFSSFSLETALMIQKRAYGQAFTYSAASVLLAIAALFAGLLVARK 124

Query: 127 L 127
           +
Sbjct: 125 V 125


>SMc01274 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Sme Sinorhizobium meliloti
          Length = 125

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 79/118 (66%)

Query: 8   LLVFFGGGLGATLRQLINVTCARCIGTAFPYGTFIINITGSTVMGLIAGYLAFRGDASQP 67
           LLV  GG LG+ LR L+ +   +  G AFP+GT  +N+TGS ++G +A ++  +  AS  
Sbjct: 5   LLVGAGGALGSVLRYLVGLWMLQRAGPAFPWGTLFVNVTGSFLIGFLAEFIMHKMGASPE 64

Query: 68  WRLFLMTGILGGYTTFSAFSLDTALLYERGELGLAVLYVAGSVALSIAGLFAGLAIVR 125
            R+FL+TG+LGGYTTFSAFSLD   L E G+    + Y+  SV LS+  +FAGLA++R
Sbjct: 65  MRVFLITGVLGGYTTFSAFSLDAIALLEHGQTMSGLAYIVASVGLSMLAVFAGLALMR 122


>mlr0333 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Mlo Mesorhizobium loti
          Length = 124

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 69/112 (61%), Gaps = 1/112 (0%)

Query: 16  LGATLRQLINVTCARCIGTAFPYGTFIINITGSTVMGLIAGYLAFRGDASQPWRLFLMTG 75
           +GA +R L N+   R +G  +P+GT  INI GS  MGL    LA RG +++  RLF+ TG
Sbjct: 13  IGAGIRHLTNMGALRLVGPNYPWGTMAINIVGSFAMGLFIAILARRGGSNEV-RLFVATG 71

Query: 76  ILGGYTTFSAFSLDTALLYERGELGLAVLYVAGSVALSIAGLFAGLAIVRHL 127
           I GG+TTFSAFSLD A L+ERG    A  Y   SV  +I  LF GL + R L
Sbjct: 72  IFGGFTTFSAFSLDFATLWERGATLPAFGYALASVIGAIIALFLGLWLARSL 123


>lin2187 [D] COG0239 Integral membrane protein possibly involved in
           chromosome condensation Lin Listeria innocua
          Length = 118

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 7/102 (6%)

Query: 6   SYLLVFFGGGLGATLRQLINVTCARCIGTAFPYGTFIINITGSTVMGLIAGYLAFRGDAS 65
           ++LLV FG  LGA LR  I++       T FPY TF INITGS ++G +         A 
Sbjct: 4   NFLLVGFGASLGAMLRYGISIFVKSKWKTDFPYATFFINITGSFLLGFLV------STAL 57

Query: 66  QP-WRLFLMTGILGGYTTFSAFSLDTALLYERGELGLAVLYV 106
            P W+LFL TG +GGYTTFS F +++  L  +    +   YV
Sbjct: 58  GPMWQLFLGTGFMGGYTTFSTFKVESMELKWKANFQVLFSYV 99