BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0006.p (452 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc04461 [U] COG0823 Periplasmic component of the Tol biopolymer... 585 e-167 AGl2244 [U] COG0823 Periplasmic component of the Tol biopolymer ... 578 e-165 BMEI0339 [U] COG0823 Periplasmic component of the Tol biopolymer... 572 e-163 mll3888 [U] COG0823 Periplasmic component of the Tol biopolymer ... 568 e-162 CC3230 [U] COG0823 Periplasmic component of the Tol biopolymer t... 478 e-134 >SMc04461 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Sme Sinorhizobium meliloti Length = 436 Score = 585 bits (1507), Expect = e-167, Method: Compositional matrix adjust. Identities = 283/436 (64%), Positives = 341/436 (78%), Gaps = 5/436 (1%) Query: 16 RRQILAGMASAGAMLGGLTGPASAQKRITITEGEFAPVPIAIPNFAAGTPGDAEVGVGVT 75 RR + A G + PA+A I I +G P+PIAI +F G E+ ++ Sbjct: 5 RRNFFRLLMVLVAGCGLIASPANALVEININKGNVEPLPIAITDFLQG-----ELAQKIS 59 Query: 76 QVITNNLKRSGLFAPIDQAAYLEKQINIDAAPNFNNWKSINAQALVTGRMTRQGNGRVKA 135 VI +LKRSGLFAPID+ A++EK N DA P F +WK INAQALV GR+T++G+GR+KA Sbjct: 60 GVIAADLKRSGLFAPIDKGAFIEKISNPDATPRFEDWKVINAQALVIGRVTQEGDGRLKA 119 Query: 136 EFRLWDVNTGQQLAGQQYDTSAEYWRRIAHIISDQIYERMTGEKGYFDTRVVFVDESGSA 195 EFRLWD GQQ+ GQQ+ T E WRR+AHII+D IYER+TGEKGYFDTR+V+V ESG Sbjct: 120 EFRLWDTFAGQQMLGQQFYTQPENWRRVAHIIADAIYERITGEKGYFDTRIVYVAESGPK 179 Query: 196 DRRVKRLALMDQDGANVRYLTRGSDLVLTPRFSPSTQEITYMEFGQGDPRVYLLNIETGQ 255 + R ++LA+MDQDGAN R LT +D+VLTPRFSP+ QEITYM F PRVYLL +ETGQ Sbjct: 180 NARKRQLAIMDQDGANSRALTNSNDIVLTPRFSPNRQEITYMSFENQQPRVYLLQLETGQ 239 Query: 256 REIVGNFPGMSFSPRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSMTRLTDTPAIDTSPSY 315 RE+VGNFPGM+F+PRFSPDGQRVIMSLQQ GN+N++ MDLRS++ TRLT+T AIDTSPSY Sbjct: 240 REVVGNFPGMTFAPRFSPDGQRVIMSLQQEGNANIYTMDLRSRTTTRLTNTAAIDTSPSY 299 Query: 316 APDGTRLCFESDRGGKPQIYVMPATGGAAQRISFGDGTYSTPVWSPRGDYIAFTKQGGGQ 375 +PDG+R+ FESDRGGK Q+YVM A G RISFGDG+YSTPVWSPRGD IAFTKQ GG+ Sbjct: 300 SPDGSRIVFESDRGGKQQLYVMGADGSGQTRISFGDGSYSTPVWSPRGDLIAFTKQSGGK 359 Query: 376 FAIGIMKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGNSGPSLFTIDVSGRNELR 435 F+IG+MKPDGSGERILT+GFHNEGPT+APNGRVLMFFR G GP L++ID++G NE Sbjct: 360 FSIGVMKPDGSGERILTTGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLTGYNEQL 419 Query: 436 VPTPGFASDPAWSPLL 451 V T GFASDPAWSPL+ Sbjct: 420 VQTQGFASDPAWSPLM 435 >AGl2244 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 443 Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust. Identities = 279/442 (63%), Positives = 344/442 (77%), Gaps = 7/442 (1%) Query: 13 RPSRRQILAGM---ASAGAMLGGLTGPASAQKRITITEGEFAPVPIAIPNFAAGTPGDAE 69 RP +I + + + A++ + PA A+ I I +G P+PIAI +F + Sbjct: 5 RPGNMKIFSPIRLVLAIAALMSVFSAPAFARVEININKGNVEPLPIAITDFMSSD----G 60 Query: 70 VGVGVTQVITNNLKRSGLFAPIDQAAYLEKQINIDAAPNFNNWKSINAQALVTGRMTRQG 129 +G V+ VI +L+RSGLFAP+++ A++EK N D P F +WK INAQALVTGR+TR+ Sbjct: 61 IGAQVSAVIAADLQRSGLFAPVNKNAFIEKISNPDQQPRFEDWKVINAQALVTGRVTRES 120 Query: 130 NGRVKAEFRLWDVNTGQQLAGQQYDTSAEYWRRIAHIISDQIYERMTGEKGYFDTRVVFV 189 +GR++AEFRLWD GQQL+GQQ+ T E WRR+AHII+D IYER+TGEKGYFDTRVVFV Sbjct: 121 DGRLRAEFRLWDTFAGQQLSGQQFFTQPENWRRVAHIIADAIYERVTGEKGYFDTRVVFV 180 Query: 190 DESGSADRRVKRLALMDQDGANVRYLTRGSDLVLTPRFSPSTQEITYMEFGQGDPRVYLL 249 ESG R ++L++MDQDG NVR LT +D+VLTPRFSP+ QE+TYM F PRVYLL Sbjct: 181 SESGPKTARKRQLSIMDQDGFNVRNLTNSNDIVLTPRFSPNRQEVTYMSFEGQQPRVYLL 240 Query: 250 NIETGQREIVGNFPGMSFSPRFSPDGQRVIMSLQQGGNSNLFVMDLRSKSMTRLTDTPAI 309 +ETGQRE+VGNFPGM+FSPRFSPDGQ+VIMSLQQ GN+N++ MDLRS++ TRLT+T AI Sbjct: 241 QLETGQREVVGNFPGMTFSPRFSPDGQKVIMSLQQDGNANIYTMDLRSRTTTRLTNTAAI 300 Query: 310 DTSPSYAPDGTRLCFESDRGGKPQIYVMPATGGAAQRISFGDGTYSTPVWSPRGDYIAFT 369 DT+PSY+PDG R+ FESDRGG+ QIYVM A G QR+SFGDG+YSTPVWSPRGD IAFT Sbjct: 301 DTAPSYSPDGQRVAFESDRGGRQQIYVMNADGSGQQRVSFGDGSYSTPVWSPRGDLIAFT 360 Query: 370 KQGGGQFAIGIMKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGNSGPSLFTIDVS 429 KQ GG+F+IG+MK DGSGERILTSGFHNEGPT+APNGRVLMFFR G GP L++ID++ Sbjct: 361 KQSGGKFSIGVMKTDGSGERILTSGFHNEGPTWAPNGRVLMFFRQNAGAGGPQLYSIDLT 420 Query: 430 GRNELRVPTPGFASDPAWSPLL 451 G NE + TP FASDPAWSPLL Sbjct: 421 GYNEQLIKTPTFASDPAWSPLL 442 >BMEI0339 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Bme Brucella melitensis Length = 443 Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust. Identities = 277/436 (63%), Positives = 341/436 (78%), Gaps = 5/436 (1%) Query: 17 RQILAGMASAGAMLGGLTGPASAQKRITITEGEFAPVPIAIPNFAAGTPGDAEVGVGVTQ 76 R + + A A T PA A I I +G P+PIAI +F + ++G +T Sbjct: 11 RTVFSAFACMIAASLVCTMPARAVVEININKGVIEPLPIAITDFLSAD----QLGSNITS 66 Query: 77 VITNNLKRSGLFAPIDQAAYLEKQINIDAAPNFNNWKSINAQALVTGRMTRQGNGRVKAE 136 VI +L+RSGLFAPID A++EK N DAAP F +WK INAQALVTGR+T+Q +GR+KAE Sbjct: 67 VIAADLERSGLFAPIDTGAFIEKISNPDAAPRFEDWKVINAQALVTGRITKQPDGRLKAE 126 Query: 137 FRLWDVNTGQQLAGQQYDTSAEYWRRIAHIISDQIYERMTGEKGYFDTRVVFVDESGSAD 196 FRLWD GQQ+ GQQ+ T+ + WRR+AHII+D IYER+TG+KGYFDTRVVFVDESG A Sbjct: 127 FRLWDTFGGQQMIGQQFFTTPDNWRRVAHIIADAIYERLTGDKGYFDTRVVFVDESGPAQ 186 Query: 197 RRVKRLALMDQDGANVRYLTRGSDLVLTPRFSPSTQEITYMEFGQGDPRVYLLNIETGQR 256 +RVKRLA+MDQDGANVR+++ G L LTPRFSP+ QE+TYM F G P+VYLL +ETGQR Sbjct: 187 KRVKRLAIMDQDGANVRFISDGRALSLTPRFSPNRQEVTYMSFEGGSPKVYLLQLETGQR 246 Query: 257 EIVGNFPGMSFSPRFSPDGQRVIMS-LQQGGNSNLFVMDLRSKSMTRLTDTPAIDTSPSY 315 E+VGNFPGM+ +PRFSPDGQ+V+MS LQ G++N++ MDLR+++ TRLT + AIDT SY Sbjct: 247 ELVGNFPGMTIAPRFSPDGQKVVMSLLQDDGSANIYTMDLRNRTTTRLTSSQAIDTGASY 306 Query: 316 APDGTRLCFESDRGGKPQIYVMPATGGAAQRISFGDGTYSTPVWSPRGDYIAFTKQGGGQ 375 +PDG+++ F SDRGG+PQ+YVM A G +RIS GDG+YSTPVWSPRGD IAFTKQ GQ Sbjct: 307 SPDGSQIVFTSDRGGRPQLYVMGADGSNPRRISMGDGSYSTPVWSPRGDLIAFTKQSQGQ 366 Query: 376 FAIGIMKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGNSGPSLFTIDVSGRNELR 435 F+IG+MK DGSGER+LTSGFHNEGPT+APNGRVLMFFR G GP LFTID++GRNE + Sbjct: 367 FSIGVMKTDGSGERLLTSGFHNEGPTWAPNGRVLMFFRKAAGAGGPKLFTIDLTGRNERQ 426 Query: 436 VPTPGFASDPAWSPLL 451 + TP FASDPAWSPLL Sbjct: 427 IQTPNFASDPAWSPLL 442 >mll3888 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Mlo Mesorhizobium loti Length = 436 Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust. Identities = 278/440 (63%), Positives = 346/440 (78%), Gaps = 11/440 (2%) Query: 17 RQILAGMASAGAMLGGLTG----PASAQKRITITEGEFAPVPIAIPNFAAGTPGDAEVGV 72 R L + + AM G+T PA A + + +G P+PIAI +F G DA +G Sbjct: 2 RSFLKPLLTIAAMALGMTAVIPMPAWALVELNVNKGNVEPLPIAITDFQGG---DA-LGA 57 Query: 73 GVTQVITNNLKRSGLFAPIDQAAYLEKQINIDAAPNFNNWKSINAQALVTGRMTRQGNGR 132 ++Q++T +LKRSGLFAPID++A++EK N DAAP F++WK INAQALVTG ++++ +GR Sbjct: 58 QISQIVTADLKRSGLFAPIDKSAFIEKISNPDAAPRFDDWKVINAQALVTGSVSKEADGR 117 Query: 133 VKAEFRLWDVNTGQQLAGQQYDTSAEYWRRIAHIISDQIYERMTGEKGYFDTRVVFVDES 192 ++A++RLWD GQQ++G+Q+ + RR+AHII+D IYER+TGEKGYFDTRVVF+DES Sbjct: 118 IRAQYRLWDTFAGQQMSGEQFFANDANQRRVAHIIADAIYERLTGEKGYFDTRVVFIDES 177 Query: 193 GSADRRVKRLALMDQDGANVRYLTRGSDLVLTPRFSPSTQEITYMEFGQGDPRVYLLNIE 252 G+ + R KRLA+MDQDGANVRYL+ G +VLTPRFSP+ QEITYM + G PRVYLL IE Sbjct: 178 GAKNARKKRLAIMDQDGANVRYLSDGRSIVLTPRFSPNRQEITYMSYESGQPRVYLLQIE 237 Query: 253 TGQREIVGNFPGMSFSPRFSPDGQRVIMS-LQQGGNSNLFVMDLRSKSMTRLTDTPAIDT 311 TGQRE+VGNFPGM+F+PRFSPDGQ+VIMS L+ GNSN+F MDLRS+S TRLT++ AIDT Sbjct: 238 TGQRELVGNFPGMTFAPRFSPDGQKVIMSLLRDDGNSNIFAMDLRSRSTTRLTNSTAIDT 297 Query: 312 SPSYAPDGTRLCFESDRGGKPQIYVMPATGGAAQRISFGDGTYSTPVWSPRGDYIAFTKQ 371 SPSY+PDG+++ F SDRGG+ QIYVM A G RISFGDG YSTPVWSPRGD IAFTKQ Sbjct: 298 SPSYSPDGSKVVFTSDRGGRAQIYVMGADGSGQTRISFGDGVYSTPVWSPRGDLIAFTKQ 357 Query: 372 GGGQFAIGIMKPDGSGERILTSGFHNEGPTFAPNGRVLMFFRDPGGNSGPSLFTIDVSGR 431 GG+F IG+MK DGSGERIL+SGF EGPT+APNGRVLMFFRD N GP L ++D++GR Sbjct: 358 TGGEFQIGVMKTDGSGERILSSGFQQEGPTWAPNGRVLMFFRD--SNGGPKLVSVDLTGR 415 Query: 432 NELRVPTPGFASDPAWSPLL 451 NE +PT FASDPAWSPLL Sbjct: 416 NEQPIPTANFASDPAWSPLL 435 >CC3230 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Ccr Caulobacter vibrioides Length = 432 Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/417 (56%), Positives = 309/417 (74%), Gaps = 8/417 (1%) Query: 36 PASAQKRITITEGEFAPVPIAIPNFAAGTPGDAEVGVGVTQVITNNLKRSGLFAPIDQAA 95 PA+AQ + I G P+PIAIP F+ T G AE+ QVIT NL+RSGLF P++ A Sbjct: 22 PAAAQIEVDINAGAVKPLPIAIPVFSGSTRG-AEIA----QVITGNLERSGLFQPLNVAG 76 Query: 96 YLEKQINIDAAPNFNNWKSINAQALVTGRMTRQGNGRVKAEFRLWDVNTGQQLAGQQYDT 155 +K +++ P F +W+S AQAL+ G++T +G ++ +FRLWDV + QQL G Q+ + Sbjct: 77 VPDKLADVNVQPRFPDWQSTGAQALINGQVTVGADGGLRVDFRLWDVFSQQQLLGLQFSS 136 Query: 156 SAEYWRRIAHIISDQIYERMTGEKGYFDTRVVFVDESGSADRRVKRLALMDQDGANVRYL 215 + + WRR+AH ISD +YER+TGEKGYFDTRV FV ESG R+KRLA+MDQDGAN +YL Sbjct: 137 TPDNWRRVAHKISDAVYERLTGEKGYFDTRVAFVAESGPKLNRIKRLAIMDQDGANPQYL 196 Query: 216 TRGSDLVLTPRFSPSTQEITYMEFGQGDPRVYLLNIETGQREIVGNFPGMSFSPRFSPDG 275 T GS +V+TPRFS ++QE+TYM +YLLN+ET ++E VG FPGM F+PRFSPDG Sbjct: 197 TDGSYIVMTPRFSSTSQELTYMALRPTGSSIYLLNLETSRQETVGKFPGMVFAPRFSPDG 256 Query: 276 QRVIMSLQQGGNSNLFVMDLRSKSMTRLTDTPAIDTSPSYAPDGTRLCFESDRGGKPQIY 335 +V S+++ GNS+++VMDLRS++ TR+T PAIDTSPS++PDGT++ F SDRGG+ QIY Sbjct: 257 SKVAFSVERNGNSDIYVMDLRSRATTRITTDPAIDTSPSFSPDGTKIVFNSDRGGQAQIY 316 Query: 336 VMPATGGAAQRISFGDGTYSTPVWSPRGDYIAFTKQGGGQFAIGIMKPDGSGERILTSGF 395 VM G +RIS+G G Y+TPVWSPRGD+IAFTKQ GG+F IG+M+ DG ER+LT+ + Sbjct: 317 VMNTDGSGVRRISYGGGRYTTPVWSPRGDFIAFTKQTGGEFHIGVMRADGGDERLLTTSY 376 Query: 396 HNEGPTFAPNGRVLMFFRD-PGGNSGPSLFTIDVSGRNELRVPTPGFASDPAWSPLL 451 +EGPT+APNGRVLMFFR+ P GN P L+T+D++GR G ASDPAWSPLL Sbjct: 377 LDEGPTWAPNGRVLMFFREGPSGN--PRLWTVDITGRILRPAAYSGSASDPAWSPLL 431