BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0239.p         (210 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll2368 [M] COG2885 Outer membrane protein and related peptidogl...    87   2e-17
PA1777 [M] COG2885 Outer membrane protein and related peptidogly...    75   1e-13
Cj1478c [M] COG2885 Outer membrane protein and related peptidogl...    67   3e-11
SMc00141_2 [M] COG2885 Outer membrane protein and related peptid...    64   3e-10
PA3692 [M] COG2885 Outer membrane protein and related peptidogly...    62   1e-09

>mll2368 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Mlo
           Mesorhizobium loti
          Length = 167

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 89  AANKPKIDLEIHFDYNSADISKGSTQAVQELGKALSDASMKGSTFVVAGHTDAIGGEAYN 148
           AA K  +D+ I+F  +SA + + +   + E  KAL D  +   +FVV GHTDA G + YN
Sbjct: 53  AAQKTGLDMMINFALDSAQLDQTARAELDEFAKALKDNRLSTFSFVVEGHTDATGPDRYN 112

Query: 149 QDLSERRADTIKKYLVEHYGLNGSDLVTVGYGKTRPKDPSAPMDPTNRRVQV 200
           QDLS+RRA ++  +L E  G+    L  +G GK+ P+  + P DP NRRV++
Sbjct: 113 QDLSQRRAQSVAAFL-EANGVESVRLEAIGLGKSHPR-VANPYDPVNRRVEM 162


>PA1777 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 350

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 94  KIDLEIHFDYNSADISKGSTQAVQELGKALSDASMKGSTFVVAGHTDAIGGEAYNQDLSE 153
           ++ L++ FD++ + + + S   ++ L   +       +T  V GHTD++G +AYNQ LSE
Sbjct: 237 RVQLDVKFDFDKSKVKENSYADIKNLADFMKQYPSTSTT--VEGHTDSVGTDAYNQKLSE 294

Query: 154 RRADTIKKYLVEHYGLNGSDLVTVGYGKTRP--KDPSAPMDPTNRRVQ 199
           RRA+ ++  LV  YG+ G  +  VGYG++RP   + +A     NRRV+
Sbjct: 295 RRANAVRDVLVNEYGVEGGRVNAVGYGESRPVADNATAEGRAINRRVE 342


>Cj1478c [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Cje
           Campylobacter jejuni
          Length = 319

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 95  IDLEIHFDYNSADISKGSTQAVQELGKALSDASMKGSTFVVAGHTDAIGGEAYNQDLSER 154
           I LE HF ++   I+    + ++E+ K L D + +  T ++ GHTD IG  AYNQ LSER
Sbjct: 210 ISLEGHFGFDKTTINPTFQEKIKEIAKVL-DENERYDT-ILEGHTDNIGSRAYNQKLSER 267

Query: 155 RADTIKKYLVEHYGLNGSDLVTVGYGKTRPKDPSAPMD--PTNRRV 198
           RA ++   L E YG+  S + TVGYG+  P+  +   +    NRRV
Sbjct: 268 RAKSVANEL-EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRV 312


>SMc00141_2 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Sme
           Sinorhizobium meliloti
          Length = 183

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%)

Query: 94  KIDLE-IHFDYNSADISKGSTQAVQELGKALSDASMK--GSTFVVAGHTDAIGGEAYNQD 150
           +IDL+ I F   SA++S    + ++ + +A++    K  G TF + GHTDA+G +  N  
Sbjct: 61  RIDLDTITFATGSAEVSMSQAKTMRNVAEAMNKVLEKDPGETFFIEGHTDAVGADQSNLV 120

Query: 151 LSERRADTIKKYLVEHYGLNGSDLVTVGYGKTRPKDPSAPMDPTNRRVQV 200
           LS+ RA+++   L E YG+   +LVT GYG+   K  +   +  NRRV +
Sbjct: 121 LSDERAESVAVLLTEVYGIPAENLVTQGYGERFLKIRTDGPEQENRRVTI 170


>PA3692 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 261

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 5/105 (4%)

Query: 98  EIHFDYNSADISKGSTQAVQELGKALSDASMKGSTFVVAGHTDAIGGEAYNQDLSERRAD 157
           ++ FD + +D+  G+ + +Q+L + L     +    +V G+TD+ G   YNQ LSERRAD
Sbjct: 143 DVLFDLDKSDLKPGAMRNIQQLAEFLQQNPER--QVIVEGYTDSTGSANYNQRLSERRAD 200

Query: 158 TIKKYLVEHYGLNGSDLVTVGYGKTRP--KDPSAPMDPTNRRVQV 200
           +++  L+   G++   + T GYGK  P   + ++     NRRV+V
Sbjct: 201 SVRMALLSR-GISPERVATRGYGKEYPVASNGTSSGRAMNRRVEV 244