BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0190.p         (151 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4508 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   128   5e-30
RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia sol...   125   3e-29
mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium...   123   1e-28
CC2535 Non COG                                                        122   2e-28
PA3965 [K] COG1522 Transcriptional regulators Pae Pseudomonas ae...   119   3e-27

>PA4508 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 157

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 90/146 (61%)

Query: 6   DEKILAELQKDGRATNQQLAETVGMSTSACWRRVRALEEAGVISGYSALVARERAGFATS 65
           D +ILA LQ+DGR +N QLAE +G+S S C RRVR LEEAGVI GY A + R+  G   +
Sbjct: 7   DHRILAALQRDGRLSNVQLAEEIGLSPSPCLRRVRLLEEAGVIRGYQASIDRDEVGLGLT 66

Query: 66  AILHVSLERHDVKFVDEFVARVMKRREVLECFATTGDADYHLRVVVRDMDAYNKFLDEFM 125
             + + +ERH  +  + F   V+   EV+     +G++D+ L+VVV D+ AY + L E +
Sbjct: 67  VFVGIKVERHRQEQAEAFHRAVVDLPEVISVHLVSGESDFLLQVVVPDLRAYERLLSETL 126

Query: 126 FRIPGIRHVRTNVILKEIKTGVALPF 151
            R+PG+  +R+N  +K +K    LP 
Sbjct: 127 LRLPGVSDIRSNFAIKTVKAPAPLPL 152


>RSp1377 [K] COG1522 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 152

 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 90/145 (62%)

Query: 6   DEKILAELQKDGRATNQQLAETVGMSTSACWRRVRALEEAGVISGYSALVARERAGFATS 65
           D +IL+ LQ+DGR  N +LA+ VG+S S C RRVR LEEAGVI  Y A++   + G   S
Sbjct: 7   DRRILSALQRDGRLQNIELAKEVGLSPSPCLRRVRLLEEAGVIERYVAVLNPAKVGKGLS 66

Query: 66  AILHVSLERHDVKFVDEFVARVMKRREVLECFATTGDADYHLRVVVRDMDAYNKFLDEFM 125
               + L+  D   VD F A + +  EV+EC    GD D+ LRVV  D++ Y +F  +++
Sbjct: 67  VFARIWLKGQDAATVDAFTAAIQQLPEVVECHLMAGDCDFLLRVVAADLEDYRQFQIQYL 126

Query: 126 FRIPGIRHVRTNVILKEIKTGVALP 150
            RIPG++ V+T V +++IK   ALP
Sbjct: 127 TRIPGVQSVKTEVPMQKIKLTSALP 151


>mll9538 [K] COG1522 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 155

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 91/145 (62%)

Query: 6   DEKILAELQKDGRATNQQLAETVGMSTSACWRRVRALEEAGVISGYSALVARERAGFATS 65
           D KI+A LQK+ +AT   LAE VG+S S C RRVR LE AGVI GY+ ++ +++ G   S
Sbjct: 10  DLKIIAALQKNAKATTNDLAEAVGLSPSPCARRVRLLERAGVIKGYTVVLDQKKLGLPIS 69

Query: 66  AILHVSLERHDVKFVDEFVARVMKRREVLECFATTGDADYHLRVVVRDMDAYNKFLDEFM 125
           A   + LER     +D F   V++  EV++C+  TG  DY +R+VVRD++AY +F+ + +
Sbjct: 70  AFASIKLERQREDDLDRFSQAVLRWPEVVDCYLMTGQRDYLMRIVVRDLEAYERFIKDKL 129

Query: 126 FRIPGIRHVRTNVILKEIKTGVALP 150
            R+  I  + ++  L ++K   ALP
Sbjct: 130 TRLDNIASIESSFALGQVKRSEALP 154


>CC2535 Non COG
          Length = 194

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 90/146 (61%)

Query: 6   DEKILAELQKDGRATNQQLAETVGMSTSACWRRVRALEEAGVISGYSALVARERAGFATS 65
           D KIL  LQ+DG+ +N  LAE VG+S S C RRV+ LE +G+I GY AL+ R +A     
Sbjct: 45  DRKILQILQEDGKISNVDLAERVGLSPSPCLRRVKQLEASGLIRGYVALLDRRKAKLDVL 104

Query: 66  AILHVSLERHDVKFVDEFVARVMKRREVLECFATTGDADYHLRVVVRDMDAYNKFLDEFM 125
           A + V ++RH  +  + F   V++  EV+ C+A TG  DY LRVVV  +DAY  F  + +
Sbjct: 105 AYVEVQVDRHSEEAAEAFQQAVLREPEVVGCYAMTGGYDYLLRVVVPSLDAYADFTMKRL 164

Query: 126 FRIPGIRHVRTNVILKEIKTGVALPF 151
            ++P ++ VR++ +L  IK   ALP 
Sbjct: 165 LKMPAVKDVRSSFVLDTIKDQTALPL 190


>PA3965 [K] COG1522 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 169

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 1/147 (0%)

Query: 6   DEKILAELQKDGRATNQQLAETVGMSTSACWRRVRALEEAGVISGYSALVARERAGFATS 65
           D +IL ELQ+D R +NQ+LAE +G+S S C RRV+ LE+ G I    AL+ R++ G + +
Sbjct: 18  DLRILEELQRDARISNQELAERIGLSPSPCSRRVKQLEDDGYIVRQVALLDRKKLGLSLT 77

Query: 66  AILHVSLERHDVKFVDEFVARVMKRREVLECFATTG-DADYHLRVVVRDMDAYNKFLDEF 124
           A + + ++RH  +  + F   + K  EVLEC   TG DADY L+VVV DMD Y K L   
Sbjct: 78  AFVLIGMDRHTPERFEHFQEVIGKCPEVLECSLVTGMDADYQLKVVVPDMDHYQKLLLGT 137

Query: 125 MFRIPGIRHVRTNVILKEIKTGVALPF 151
           + RI G+  VR++ +L ++     LP 
Sbjct: 138 LTRIEGVSSVRSSFVLNQVLASTELPL 164