BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0172.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr7786 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 381 e-105 CC1474 Non COG 354 2e-97 BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella mel... 198 1e-50 AGpA286 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 196 5e-50 RSc2327 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 194 3e-49 >mlr7786 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 306 Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust. Identities = 189/302 (62%), Positives = 229/302 (75%) Query: 1 MSKLPDFEALAIFAKVVELRSFAAAATELSLSKATVSKAVSRLEERLGARLFNRTSRRLA 60 MSK PDFE LA+FAKV E RSFAAAA L LS ATVS+ VSRLEERLGARLFNRTSRRLA Sbjct: 1 MSKAPDFEGLAMFAKVAEERSFAAAARVLGLSVATVSRGVSRLEERLGARLFNRTSRRLA 60 Query: 61 LTDAGQKLSERAARLLADGEAAENEALAQSTTPRGLVRLAVPMSFGIKTVAPLLPEFMEA 120 LTD G +L+ERA+RL D E AEN A S +PRGLVRLAVPMSFG++ VAPLLP+F + Sbjct: 61 LTDFGHRLAERASRLYRDAEDAENAARELSASPRGLVRLAVPMSFGLRWVAPLLPDFFKL 120 Query: 121 YPEVSIDLHLSDATVDLIGEGFDAGLRIARLPDSSLIARRLCGMPRYTVAAPSYLKRHGR 180 YP+VSID+HLSDA VDLIGEGFDA LRIA LPDSSL+ARRLC + + VAAPSYL RHGR Sbjct: 121 YPDVSIDMHLSDAVVDLIGEGFDAALRIAVLPDSSLVARRLCSIAPFIVAAPSYLARHGR 180 Query: 181 PTHPMHLAEHKCFGYAYLSTQGVWHYTNASGEQASVRPAGQLRVNNGEAVMPALLAGLGI 240 P+ P L H C GYAY Q VWH++NA+G++ V P+G LRV N +A++P +LAG+ I Sbjct: 181 PSTPRDLDAHHCLGYAYRPRQDVWHFSNAAGDEEVVTPSGPLRVTNSDALVPTVLAGIAI 240 Query: 241 ADLPDFIVGDAIARGEVEVILKGWKQPEGAVHLVTPPGGPRPARVEVLADFLAKHFAKGR 300 A+LP+FI + +A G ++ IL W P GA++ VTP RPA+VE +A F+A H ++ Sbjct: 241 AELPEFIASEYLADGRLQAILTDWTLPRGALYFVTPSARARPAKVEAVAGFMAAHLSRPS 300 Query: 301 AQ 302 Q Sbjct: 301 WQ 302 >CC1474 Non COG Length = 298 Score = 354 bits (908), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/298 (65%), Positives = 231/298 (77%) Query: 1 MSKLPDFEALAIFAKVVELRSFAAAATELSLSKATVSKAVSRLEERLGARLFNRTSRRLA 60 MSKLPD E LA+FAKV ELRSFAAA+ L+LSKATVSKAV+RLE RLGARL NRTSRRLA Sbjct: 1 MSKLPDLEGLAVFAKVAELRSFAAASEALALSKATVSKAVTRLELRLGARLLNRTSRRLA 60 Query: 61 LTDAGQKLSERAARLLADGEAAENEALAQSTTPRGLVRLAVPMSFGIKTVAPLLPEFMEA 120 LTDAGQ L ERA+R+LA+ EAAE EA +QS PRGLVR+A PMS G+ ++AP+LP F+EA Sbjct: 61 LTDAGQALVERASRVLAEAEAAEEEASSQSAAPRGLVRMAAPMSLGVASLAPVLPAFLEA 120 Query: 121 YPEVSIDLHLSDATVDLIGEGFDAGLRIARLPDSSLIARRLCGMPRYTVAAPSYLKRHGR 180 YP+VSIDLHLSDATVDLIG GFD LR+A LPDSSL+ARRL + R+ VAAP+Y HGR Sbjct: 121 YPDVSIDLHLSDATVDLIGMGFDIALRVADLPDSSLLARRLRAVQRHVVAAPAYWTAHGR 180 Query: 181 PTHPMHLAEHKCFGYAYLSTQGVWHYTNASGEQASVRPAGQLRVNNGEAVMPALLAGLGI 240 PTHP LAEH+ Y + ++ W + A GE+A+VRP LR NNG+A++P LLAG G+ Sbjct: 181 PTHPADLAEHRGLTYGHQASPETWRFQRAGGEEAAVRPRSVLRANNGDALLPPLLAGTGV 240 Query: 241 ADLPDFIVGDAIARGEVEVILKGWKQPEGAVHLVTPPGGPRPARVEVLADFLAKHFAK 298 A LPDFIVG A+A +E +L W A+HLV PPGGPRPARV VLAD+LAK + Sbjct: 241 AMLPDFIVGPALADRRLEAVLTEWSAAPIALHLVMPPGGPRPARVSVLADYLAKTLGR 298 >BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 325 Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 168/297 (56%), Gaps = 8/297 (2%) Query: 1 MSKLPDFEALAIFAKVVELRSFAAAATELSLSKATVSKAVSRLEERLGARLFNRTSRRLA 60 MS L D E IFA+VV S +AAA +L LS A VSK + RLEERLG RL RT+R++A Sbjct: 21 MSSLADME---IFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIA 77 Query: 61 LTDAGQKLSERAARLLADGEAAENEALAQSTTPRGLVRLAVPMSFGIKTVAPLLPEFMEA 120 LT+AGQ ER +LA+ E AE +S RG ++++ P +FG +AP L FM A Sbjct: 78 LTEAGQGYHERVLAILANIEEAEAFVARRSADARGTLKISAPTTFGRMHIAPYLVPFMRA 137 Query: 121 YPEVSIDLHLSDATVDLIGEGFDAGLRIARLPDSSLIARRLCGMPRYTVAAPSYLKRHGR 180 ++++++ LSD VD++G+G+D +RI L DS+L+ARRL + R VAAP YLK G Sbjct: 138 NADLTVNMQLSDEMVDIVGDGYDLAIRIGELSDSTLVARRLAPVRRIFVAAPRYLKERGT 197 Query: 181 PTHPMHLAEHKCFGYAYLSTQGVWHYTNASGEQASVRPAGQLRVNNGEAVMPALLAGLGI 240 P L +H C W G +RP G L+ N+ E V A+LAGLGI Sbjct: 198 PQTIEDLQDHICLAP---HNNDPWRLEGPKGP-IVIRPTGPLQTNSSEIVREAVLAGLGI 253 Query: 241 ADLPDFIVGDAIARGEVEVILKGWKQPEG-AVHLVTPPGGPRPARVEVLADFLAKHF 296 A + VG +A G++ +L + A+H V P PA+V + D+LA + Sbjct: 254 AQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFIDYLADLY 310 >AGpA286 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 302 Score = 196 bits (498), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 168/289 (58%), Gaps = 3/289 (1%) Query: 10 LAIFAKVVELRSFAAAATELSLSKATVSKAVSRLEERLGARLFNRTSRRLALTDAGQKLS 69 L F +VVE S A AA+ L ++K+ VS+ +SRLE LGA L R+ + ALTD G++ Sbjct: 15 LISFIRVVETGSIAGAASRLGIAKSIVSRRISRLENFLGATLLTRSQKGTALTDVGREYH 74 Query: 70 ERAARLLADGEAAENEALAQSTTPRGLVRLAVPMSFGIKTVAPLLPEFMEAYPEVSIDLH 129 RAA LA+ E+A+ + +T G VR++VP++FG +APLL EF +P + D+ Sbjct: 75 LRAASGLAELESAQEMVVRSTTEASGQVRVSVPVAFGEFCLAPLLAEFALLHPRIHFDVR 134 Query: 130 LSDATVDLIGEGFDAGLRIARLPDSSLIARRLCGMPRYTVAAPSYLKRHGRPTHPMHLAE 189 D DL+ E +D +RI +PDS LI R+L + VA+PSYL+ GRP+ P LA Sbjct: 135 FEDRQPDLVAEAYDLAVRIGSIPDSVLITRKLAKVRWAVVASPSYLEARGRPSKPSELAA 194 Query: 190 HKCFGYAYLSTQGVWHYTNASGEQASVRPAGQLRVNNGEAVMPALLAGLGIADLPDFIVG 249 H Y++ T G W + G + VR Q R +NG+ ++ A AGLGI LP F+V Sbjct: 195 HNAILYSF-DTFG-WRFQGPDGWE-QVRVNSQFRSDNGQMMLSAARAGLGIVVLPVFMVQ 251 Query: 250 DAIARGEVEVILKGWKQPEGAVHLVTPPGGPRPARVEVLADFLAKHFAK 298 +++A G++E ++ G+ +H++ PP ARV L +FL + F + Sbjct: 252 ESLASGDLEEVVPGYSHAGADLHILMPPARAGIARVRALVNFLYEKFER 300 >RSc2327 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 299 Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 164/295 (55%), Gaps = 1/295 (0%) Query: 9 ALAIFAKVVELRSFAAAATELSLSKATVSKAVSRLEERLGARLFNRTSRRLALTDAGQKL 68 A+ IF + VEL S +AAA EL LS + V LE LG +L NRT+RR +LTD G+ Sbjct: 6 AMQIFVRTVELGSMSAAAVELDLSSQLAGRQVRALEGTLGVKLLNRTTRRQSLTDGGRLF 65 Query: 69 SERAARLLADGEAAENEALAQSTTPRGLVRLAVPMSFGIKTVAPLLPEFMEAYPEVSIDL 128 ERA +LA+ EAA+ + PRG +R++ P++FG K +AP L EFM +P+++++L Sbjct: 66 YERAKNILAELEAAQAQIDESRALPRGRLRISAPITFGSKALAPRLAEFMNQFPDITVEL 125 Query: 129 HLSDATVDLIGEGFDAGLRIARLPDSSLIARRLCGMPRYTVAAPSYLKRHGRPTHPMHLA 188 L++ TVDL+ E FDA R LPDS L+ARRL A+P YLK G P P L Sbjct: 126 SLTNRTVDLVEEAFDAAFRTGDLPDSGLMARRLAPHRLMLCASPGYLKMRGHPRTPEDLR 185 Query: 189 EHKCFGYAYLSTQGVWHYTNASGEQASVRPAGQLRVNNGEAVMPALLAGLGIADLPDFIV 248 +H+C +A+ S + W + G + G+ ++GEA+ A +AG+GI P ++ Sbjct: 186 KHECLVFAHTSLRTQWSFEGPDG-SVKIPIKGKFLADSGEALRAAAVAGVGIILQPAELL 244 Query: 249 GDAIARGEVEVILKGWKQPEGAVHLVTPPGGPRPARVEVLADFLAKHFAKGRAQR 303 + I G + ILK ++ ++H++ P ++ DF++ F R Sbjct: 245 AEDIQTGLLTRILKRYEPTPRSLHVLYAPDRRMTQKLRAFLDFVSHAFGDSNVTR 299