BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0156.p         (230 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

slr0498 [P] COG1226 Kef-type K+ transport systems, predicted NAD...    76   5e-14

>slr0498 [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding
           component Syn Synechocystis
          Length = 234

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 2/119 (1%)

Query: 112 VTVARATFAPGRVTYHRVIGAVLLYLTVAVIFAALYTFVGTLRPDAFPGMKVEDSPTLAS 171
           +T+++      +V  + ++GA+ +YL + V +  LY     + P  F  ++ +       
Sbjct: 109 ITISQQLNKVQKVDQNALLGAISVYLLIGVFWFLLYRISYIISPTNFNELQSDGINNFI- 167

Query: 172 RVLYFSFATLTTTGYGDVAPLHPIARSLCNLEAIFGQLYPATLLARLVTLEIEHRNEES 230
            +LYFSF TLTT GYGD+ P   IA  L N+EAI GQ+Y    +ARLV+L     N  S
Sbjct: 168 -LLYFSFTTLTTLGYGDITPTDSIAMGLSNMEAIVGQMYSVIFVARLVSLYTTDLNCHS 225