BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0059.0096.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01233 [L] COG0629 Single-stranded DNA-binding protein Sme Sin...    76   2e-14
CC1468 [L] COG0629 Single-stranded DNA-binding protein Ccr Caulo...    74   1e-13
RC1295 [L] COG0629 Single-stranded DNA-binding protein Rco Ricke...    72   3e-13
VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibri...    71   7e-13
RP836 [L] COG0629 Single-stranded DNA-binding protein Rpr Ricket...    69   2e-12

>SMc01233 [L] COG0629 Single-stranded DNA-binding protein Sme Sinorhizobium
           meliloti
          Length = 174

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 61/97 (62%), Gaps = 10/97 (10%)

Query: 1   VYIEGQLQTRKWTDQSGVEKYSTEVVLQGFNSNLTMLDGRGGGGGSFSDDAG-------S 53
           +YIEGQLQTRKW DQ+G ++YSTEVVLQGFNS LTMLDGRGG GG               
Sbjct: 78  LYIEGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGGEGGGAGRGGSDYGGGGYE 137

Query: 54  DFGSSGPVSSAPRRXGVA---AGGGSRNSDMDDDIPF 87
           ++  S P S   R  G +     GG+ + D+DDDIPF
Sbjct: 138 EYDQSRPSSGGARSGGQSNQPNQGGNFSRDLDDDIPF 174


>CC1468 [L] COG0629 Single-stranded DNA-binding protein Ccr Caulobacter
           vibrioides
          Length = 167

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 1   VYIEGQLQTRKWTDQSGVEKYSTEVVLQGFNSNLTMLDGRGGGGGSFSDDAGSDFGSSGP 60
           VYIEG LQTRKWTD +G EKYSTE+VLQ F   LTML GRGG  G  S       G    
Sbjct: 78  VYIEGALQTRKWTDNTGQEKYSTEIVLQKFRGELTMLGGRGGDAGMSSGGGDEYGGGYSG 137

Query: 61  VSSAPRRXGVAAGGGSRNS---DMDDDIPF 87
             S+      +   G R S   D+DD+IPF
Sbjct: 138 GGSSFGGGQRSQPSGPRESFSADLDDEIPF 167


>RC1295 [L] COG0629 Single-stranded DNA-binding protein Rco Rickettsia
           conorii
          Length = 152

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 12/87 (13%)

Query: 1   VYIEGQLQTRKWTDQSGVEKYSTEVVLQGFNSNLTMLDGRGGGGGSFSDDAGSDFGSSGP 60
           +YIEG LQTRKW D SG EKY+TEVVLQ FNS L +LD +       S++   D G S  
Sbjct: 78  LYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSKN------SNNHNQDSGHS-- 129

Query: 61  VSSAPRRXGVAAGGGSRNSDMDDDIPF 87
                 +          +SD+DD+IPF
Sbjct: 130 ----EYKHPETKNHSFDHSDLDDEIPF 152


>VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibrio cholerae
          Length = 177

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 13/100 (13%)

Query: 1   VYIEGQLQTRKWTDQSGVEKYSTEVVLQGFNSNLTMLDGRGGGGGSFSD---DAGSDFGS 57
           VYIEGQLQTRKW DQSG ++YSTEVV+QG+N  + ML GR   GG  +    +  +  GS
Sbjct: 78  VYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNVPAQQGS 137

Query: 58  SG-PVSSAPRRXGVAAGGGSRNS---------DMDDDIPF 87
            G P   A +   +      + S         D DDDIPF
Sbjct: 138 WGQPQQPAKQHQPMQQSAPQQYSQPQYNEPPMDFDDDIPF 177


>RP836 [L] COG0629 Single-stranded DNA-binding protein Rpr Rickettsia
           prowazekii
          Length = 152

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 12/87 (13%)

Query: 1   VYIEGQLQTRKWTDQSGVEKYSTEVVLQGFNSNLTMLDGRGGGGGSFSDDAGSDFGSSGP 60
           +YIEG LQTRKW D SG EKY+TEVVLQ FNS L +LD +     +         GS   
Sbjct: 78  LYIEGSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDHKNSNQNT--------QGSGHH 129

Query: 61  VSSAPRRXGVAAGGGSRNSDMDDDIPF 87
               P            +SD+DD+IPF
Sbjct: 130 EYKYPE----TKNHSFDHSDLDDEIPF 152