BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0069.p (416 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr1064 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved ... 476 e-134 BMEI1073 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved... 473 e-133 SMc02053 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved... 465 e-130 CC2598 Non COG 447 e-125 AGc3069 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved ... 445 e-125 >mlr1064 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation Mlo Mesorhizobium loti Length = 472 Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/304 (75%), Positives = 251/304 (82%), Gaps = 2/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +G GLAGSEAAWQ A AGV VLHEMRP R T+AH+TDG A VCSNSFRSDDA NNAVG Sbjct: 9 IGGGLAGSEAAWQAAQAGVPVVLHEMRPVRGTDAHKTDGLAELVCSNSFRSDDAENNAVG 68 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 LLHAEMR GSLIM + DANQVPAGGALAVDRDGFS AVTK L HPLI I REEV+GLP Sbjct: 69 LLHAEMRLAGSLIMSAGDANQVPAGGALAVDRDGFSDAVTKKLEAHPLISIQREEVSGLP 128 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 PADW I+ATGPLT+ LA +I + T ALAFFDAIAPI+H D+IDM WFQSRYDK Sbjct: 129 PADWDQAIIATGPLTAPSLARSIAEATGADALAFFDAIAPIIHFDTIDMDTCWFQSRYDK 188 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTG DYINCPM K+QY AFV AL+DG+K +FK WE TPYFDGCLP+E+MAERG E Sbjct: 189 VGPGGTGKDYINCPMDKDQYLAFVQALIDGQKTEFKQWE-GTPYFDGCLPIEIMAERGVE 247 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLR+GPMKP+GLTN HNP VK YA+VQLRQDN LGTLYN+VGFQTKLKH Q RVFRTIP Sbjct: 248 TLRYGPMKPMGLTNAHNPMVKAYAVVQLRQDNALGTLYNMVGFQTKLKHAEQVRVFRTIP 307 Query: 300 GLXD 303 GL + Sbjct: 308 GLEN 311 >BMEI1073 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation Bme Brucella melitensis Length = 478 Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust. Identities = 225/304 (74%), Positives = 254/304 (83%), Gaps = 2/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +G GLAGSEAAWQ+A AGV VLHEMRP R T+AH+T+ A VCSNSFRSDDA NAVG Sbjct: 25 IGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHKTEQLAELVCSNSFRSDDAETNAVG 84 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 +LHAEMR GSLIM ADA+QVPAGGALAVDR+GFS AVT L HPLI I REE+ GLP Sbjct: 85 VLHAEMRLAGSLIMACADAHQVPAGGALAVDREGFSQAVTARLEAHPLITIEREEITGLP 144 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 P +W I+ATGPLT+ LA+AI TD ALAFFDAIAPI+H DSI+M V WFQSRYDK Sbjct: 145 PTEWGTTIIATGPLTAPSLAEAIAAETDADALAFFDAIAPIIHFDSINMDVCWFQSRYDK 204 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTG DYINCPM KEQY+AFVAAL++G+K DFK+WE TPYFDGCLP+EVMAERG E Sbjct: 205 VGPGGTGKDYINCPMDKEQYEAFVAALIEGDKTDFKEWE-GTPYFDGCLPIEVMAERGPE 263 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKP+GLTN HNPTVKPYA+VQLRQDN LGTLYN+VGFQTKLK+G+Q +F+ IP Sbjct: 264 TLRHGPMKPMGLTNAHNPTVKPYAVVQLRQDNALGTLYNMVGFQTKLKYGSQTGIFKMIP 323 Query: 300 GLXD 303 GL + Sbjct: 324 GLEN 327 >SMc02053 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation Sme Sinorhizobium meliloti Length = 472 Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/304 (72%), Positives = 253/304 (83%), Gaps = 2/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 +G GLAGSEAAWQ+A AGV +LHEMR R T+AH+T+ A VCSNSFRSDDA +NAVG Sbjct: 14 IGGGLAGSEAAWQIAEAGVPVILHEMRGVRGTDAHKTESLAELVCSNSFRSDDATSNAVG 73 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 +LHAEMR GSLIMR AD NQVPAGGALAVDR+GF+ AV+ A+ +HPLI + REE+ GLP Sbjct: 74 VLHAEMRLAGSLIMRCADLNQVPAGGALAVDREGFAEAVSAAIADHPLITVLREEIRGLP 133 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 P DW I+ATGPLT+ LA+AIR T ALAFFDAIAPIVH D+IDM + W QSRYDK Sbjct: 134 PKDWDLAIIATGPLTAPDLAEAIRAETGADALAFFDAIAPIVHADTIDMDICWHQSRYDK 193 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTG DYINCP+T+EQYDAFV AL+ G+K FK+WE TPYFDGCLP+EVMAERG E Sbjct: 194 VGPGGTGKDYINCPLTQEQYDAFVDALIAGDKAGFKEWE-GTPYFDGCLPIEVMAERGRE 252 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKP+GLTN HNP+VKPYA+VQLRQDN LGTLYN+VGFQTKLK+GAQ VFR IP Sbjct: 253 TLRHGPMKPMGLTNAHNPSVKPYAVVQLRQDNALGTLYNMVGFQTKLKYGAQGEVFRMIP 312 Query: 300 GLXD 303 GL + Sbjct: 313 GLQN 316 >CC2598 Non COG Length = 474 Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/314 (70%), Positives = 248/314 (78%), Gaps = 12/314 (3%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRP-----HRMTEAHRTDGCA-XVCSNSFRSDDAA 54 +G GLAGSEAAWQ+A +GV +LHEMR +T+AH+TDG A VCSNSFRSDD Sbjct: 13 IGGGLAGSEAAWQIAQSGVPVILHEMRKDDATGKVITDAHQTDGLAEMVCSNSFRSDDWQ 72 Query: 55 NNAVGLLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREE 114 NAVGLLHAEMR+LGSLIM AD +QVPAGGALAVDRDGFS VTK L++HPL+ I REE Sbjct: 73 FNAVGLLHAEMRKLGSLIMSCADQHQVPAGGALAVDRDGFSTEVTKRLSQHPLVTIVREE 132 Query: 115 VAGLPPA-----DWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMS 169 +AGLPPA W NVIVATGPLTS LA A+ LT E L+FFDAIAPI+H +SI+M Sbjct: 133 IAGLPPAPDGKNGWDNVIVATGPLTSPALAQAVLDLTGEGQLSFFDAIAPIIHFESINMD 192 Query: 170 VAWFQSRYDKVGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLP 229 +AW QSRYDK GPGG A YINCPM KEQY+AF+ ALL G K +FK+WE N PYFDGCLP Sbjct: 193 IAWRQSRYDKEGPGGDAAAYINCPMNKEQYEAFIDALLAGPKSEFKEWE-NVPYFDGCLP 251 Query: 230 VEVMAERGHETLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHG 289 +EVMAERG ETLRHGPMKPVGLTNP +P VK YAIVQLRQDN LGTL+N+VGFQTKLKHG Sbjct: 252 IEVMAERGRETLRHGPMKPVGLTNPRDPLVKAYAIVQLRQDNALGTLWNMVGFQTKLKHG 311 Query: 290 AQQRVFRTIPGLXD 303 Q FR IPGL D Sbjct: 312 VQAETFRMIPGLED 325 >AGc3069 [J] COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 519 Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust. Identities = 210/304 (69%), Positives = 246/304 (80%), Gaps = 2/304 (0%) Query: 1 VGAGLAGSEAAWQVANAGVRAVLHEMRPHRMTEAHRTDGCAX-VCSNSFRSDDAANNAVG 59 VG GLAGSEAAWQ+A +GV +LHEMR R T+AH+ D A VCSNSFRSDDA NAVG Sbjct: 50 VGGGLAGSEAAWQIAESGVPVILHEMRGVRGTDAHKGDTLAELVCSNSFRSDDATANAVG 109 Query: 60 LLHAEMRRLGSLIMRSADANQVPAGGALAVDRDGFSAAVTKALNEHPLIEISREEVAGLP 119 ++HAEMR GSLI+ AD +QVPAGGALAVDRDGFS AVT L HPL+ + REEV GLP Sbjct: 110 VIHAEMRLAGSLIIACADKHQVPAGGALAVDRDGFSQAVTDMLENHPLVTVVREEVTGLP 169 Query: 120 PADWSNVIVATGPLTSAPLADAIRQLTDESALAFFDAIAPIVHKDSIDMSVAWFQSRYDK 179 P +W + ++ATGPLTS LA A++ T E ALAFFDAIAPI+H+DSI+M + W+QSRYDK Sbjct: 170 PKEWGSTVIATGPLTSPDLAAAVQAETGEDALAFFDAIAPILHRDSINMDICWYQSRYDK 229 Query: 180 VGPGGTGADYINCPMTKEQYDAFVAALLDGEKVDFKDWETNTPYFDGCLPVEVMAERGHE 239 VGPGGTG DYINCPM +EQY+ F+ AL+ G+ V FK+WE TPYFDGCLP+E+MAERG + Sbjct: 230 VGPGGTGKDYINCPMDEEQYNVFIDALIAGDTVGFKEWE-GTPYFDGCLPIEIMAERGRQ 288 Query: 240 TLRHGPMKPVGLTNPHNPTVKPYAIVQLRQDNKLGTLYNIVGFQTKLKHGAQQRVFRTIP 299 TLRHGPMKP+GLTN HNPTVK YA+VQLRQDN LGTLYN+VGFQTKLK+ Q VFR IP Sbjct: 289 TLRHGPMKPMGLTNAHNPTVKAYAVVQLRQDNALGTLYNMVGFQTKLKYSVQADVFRMIP 348 Query: 300 GLXD 303 GL + Sbjct: 349 GLEN 352