BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0066.p (207 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport... 176 3e-44 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 176 4e-44 alr2541 [E] COG0410 ABC-type branched-chain amino acid transport... 173 2e-43 TM1139 [E] COG0410 ABC-type branched-chain amino acid transport ... 170 2e-42 SMc02358 [E] COG0410 ABC-type branched-chain amino acid transpor... 168 9e-42 >PAE1388 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Pya Pyrobaculum aerophilum Length = 234 Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 130/201 (64%), Gaps = 2/201 (0%) Query: 3 GPNGAGKSTLLNAIAGVVPPGSGSIMIDGAKITGAAPEDIARRGFSLVPEGRNVFGALTI 62 GPNGAGK+T L +I GVV P G + + G +T A P G SLVPEGR +F +T+ Sbjct: 35 GPNGAGKTTTLLSIMGVVKPWGGKVELGGVDVTSAPPYKKVELGLSLVPEGRRLFPEMTV 94 Query: 63 EENLKVGTGMRADRKKIADDLDQVYEEFPMLAERRHTPAGMLSGGQQQMLVIGRALMAAP 122 EENL +G + R+K D L+ VY FP L ERR AG +SGG+QQML I RALMA P Sbjct: 95 EENLLMGAYTKRAREKARDSLEFVYSLFPRLKERRRQKAGTMSGGEQQMLAIARALMARP 154 Query: 123 RIMAIDEPSLGLAPKIIDQVYEILVRLRTQRKLTLLIVEQSSTRAMMTGGRMVLIRGGRI 182 R++ IDEPS GLAPK++ +++ + +LR++ +++L+VEQ+ A+ ++ GRI Sbjct: 155 RVLLIDEPSAGLAPKVVADLFQTISQLRSE--MSVLLVEQNVAVALEISDYAYVLENGRI 212 Query: 183 VLEGPAADMVRDDRLKQSYFG 203 VL+G +++ + +K++Y G Sbjct: 213 VLQGTPSELAENQHVKRAYLG 233 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 176 bits (445), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 83/204 (40%), Positives = 137/204 (67%), Gaps = 2/204 (0%) Query: 1 VTGPNGAGKSTLLNAIAGVVPPGSGSIMIDGAKITGAAPEDIARRGFSLVPEGRNVFGAL 60 + G NGAGK+T L I+G++ P SGSI+ +G + +I + G + VPEGR +F L Sbjct: 34 IIGANGAGKTTTLQTISGLITPKSGSIIFEGKNLLKEKAHNICKLGIAQVPEGRRIFSKL 93 Query: 61 TIEENLKVGTGMRADR-KKIADDLDQVYEEFPMLAERRHTPAGMLSGGQQQMLVIGRALM 119 +++NLK+G D +K +D Y+ FP ++ER++ AG LSGG+QQML +GRALM Sbjct: 94 AVKDNLKLGQFTVKDSAEKKEEDRANFYKVFPRMSERKNQLAGTLSGGEQQMLAMGRALM 153 Query: 120 AAPRIMAIDEPSLGLAPKIIDQVYEILVRLRTQRKLTLLIVEQSSTRAMMTGGRMVLIRG 179 + P+++ +DEPS+GL+P + +++E++ +L+ ++ T+L+VEQ++ A+ R +I Sbjct: 154 SRPKLLILDEPSMGLSPLFVKEIFEVIKQLK-EKGTTILLVEQNAKMALSISDRAYVIET 212 Query: 180 GRIVLEGPAADMVRDDRLKQSYFG 203 G IVLEG A D++ +DR+K++Y G Sbjct: 213 GEIVLEGKAEDLLYNDRVKKAYLG 236 >alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 264 Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 85/203 (41%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 1 VTGPNGAGKSTLLNAIAGVVPPGSGSIMIDGAKITGAAPEDIARRGFSLVPEGRNVFGAL 60 + G NGAGKST L AI+ +V P +G I+ G IT P ++ + G + PEGR V Sbjct: 63 LIGANGAGKSTTLRAISKIVTPKNGQIIYSGRNITRRLPHEVVKFGIAHCPEGRRVLAKQ 122 Query: 61 TIEENLKVGTGMRADRKKIADDLDQVYEEFPMLAERRHTPAGMLSGGQQQMLVIGRALMA 120 T+ +NL +G +R+++ +I D+ Q +E FP LA+R++ AG LSGG+QQML I RALM+ Sbjct: 123 TVLDNLLLGAYIRSNQTEIKADIKQQFELFPRLAQRQNQLAGTLSGGEQQMLAIARALMS 182 Query: 121 APRIMAIDEPSLGLAPKIIDQVYEILVRLRTQRKLTLLIVEQSSTRAMMTGGRMVLIRGG 180 P+++ +DEPSLGLAP I+ +++ I+ LR +T+L+VEQ++ A+ R ++ G Sbjct: 183 RPQLLLLDEPSLGLAPAIVREIFSIIENLRAT-GVTILLVEQNANLALQIADRGYVLEAG 241 Query: 181 RIVLEGPAADMVRDDRLKQSYFG 203 I L G A++++ D+R+K++Y G Sbjct: 242 SITLSGAASNLINDERVKKAYLG 264 >TM1139 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Tma Thermotoga maritima Length = 239 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 1 VTGPNGAGKSTLLNAIAGVVPPGSGSIMIDGAKITGAAPEDIARRGFSLVPEGRNVFGAL 60 + G NGAGK+T L+AIAG+V G I+ +G IT I R G +LVPEGR +F L Sbjct: 36 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 95 Query: 61 TIEENLKVGTGMRADRKKIADDLDQVYEEFPMLAERRHTPAGMLSGGQQQMLVIGRALMA 120 T+ ENL +G R D++ I DL+ ++ FP L ER G LSGG+QQML IGRALM+ Sbjct: 96 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS 155 Query: 121 APRIMAIDEPSLGLAPKIIDQVYEILVRLRTQRKLTLLIVEQSSTRAMMTGGRMVLIRGG 180 P+++ +DEPSLGLAP ++ +V+E++ ++ Q T+L+VEQ++ A+ ++ G Sbjct: 156 RPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNALGALKVAHYGYVLETG 214 Query: 181 RIVLEGPAADMVRDDRLKQSYFG 203 +IVLEG A++++ ++ ++++Y G Sbjct: 215 QIVLEGKASELLDNEMVRKAYLG 237 >SMc02358 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sme Sinorhizobium meliloti Length = 235 Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 90/202 (44%), Positives = 130/202 (64%), Gaps = 2/202 (0%) Query: 3 GPNGAGKSTLLNAIAGVVPPGSGSIMIDGAKITGAAPEDIARRGFSLVPEGRNVFGALTI 62 G NGAGKS+ + IAG + G+I ++G IT A+PE + R G + VPE R+VF LT+ Sbjct: 34 GANGAGKSSTIKCIAGALKASGGTITLEGKDITAASPEQVVRAGLATVPETRDVFPDLTV 93 Query: 63 EENLKVGTGM-RADRKKIADDLDQVYEEFPMLAERRHTPAGMLSGGQQQMLVIGRALMAA 121 ENL +G + R D+ D+L+++ FP LAER AG LSGG+QQMLVI RALMA Sbjct: 94 AENLMLGAFIHRRDQAGNRDNLEKLNTLFPRLAERSKQAAGTLSGGEQQMLVIARALMAR 153 Query: 122 PRIMAIDEPSLGLAPKIIDQVYEILVRLRTQRKLTLLIVEQSSTRAMMTGGRMVLIRGGR 181 PR++ +DEPSLGLAP I+++++E++ L+ + LT+L+VEQ+ +A+ R ++R G Sbjct: 154 PRVLLLDEPSLGLAPAIVERIFEMIETLK-KSGLTILLVEQNVNQALAVADRAFVMRLGA 212 Query: 182 IVLEGPAADMVRDDRLKQSYFG 203 IV G A ++ L Y G Sbjct: 213 IVASGTAEEIRSTSDLSAHYLG 234