BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0058.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0495 [E] COG2049 Allophanate hydrolase subunit 1 Pae Pseudomon... 390 e-108 FN0437 [E] COG2049 Allophanate hydrolase subunit 1 Fnu Fusobacte... 97 4e-20 CC1829_3 Non COG 92 1e-18 PAB1713 [E] COG2049 Allophanate hydrolase subunit 1 Pab Pyrococc... 89 1e-17 PH0987 [E] COG2049 Allophanate hydrolase subunit 1 Pho Pyrococcu... 89 1e-17 >PA0495 [E] COG2049 Allophanate hydrolase subunit 1 Pae Pseudomonas aeruginosa Length = 292 Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust. Identities = 182/286 (63%), Positives = 223/286 (77%), Gaps = 1/286 (0%) Query: 4 RFSFGGDEHIFAEVGEAMSLEAFFKSLFITNAVRDARIKGVTEICPANASYQVKFDPDRI 63 R+SFGGDEH+FAEV EAMSLEAFF+ + IT A+ ++ GV ++C ANAS+QV+FDPDR+ Sbjct: 6 RYSFGGDEHLFAEVAEAMSLEAFFRGMAITRAIEALQLPGVLDVCLANASFQVRFDPDRL 65 Query: 64 KPDDLLAELKRLDSASEKSEPVIKTRIIEIPVLYNDPWTHETLMRFRERHQNPDGTDLEY 123 P LL ++ L++ + + I+TRI+E+PVLYNDPWTHETLMRFR+RHQ+PD TDLEY Sbjct: 66 APQALLETVRGLEAEAVAARS-IETRIVEVPVLYNDPWTHETLMRFRDRHQDPDSTDLEY 124 Query: 124 AARINGLDSVDAFIKAHSSAPWFVSMVGFVAGLPFLYQMVERKRQLQAPKYLRPRTDTPK 183 AARING V AFI+AHS PWFVSMVGFVAGLPF+YQMVER+RQLQ PKYLRPR DTPK Sbjct: 125 AARINGYADVQAFIQAHSGTPWFVSMVGFVAGLPFMYQMVERERQLQVPKYLRPRIDTPK 184 Query: 184 LTVGHGGCFSCIYSVRGAGGYQMFGITPMPIYDPNQTISYLRDFMCLFKPGDIVKWKPID 243 LT+GHGGCF CIYSVRGAGGYQMFG+TP PI+DP Q + YL + M F+ GDIV+++PI+ Sbjct: 185 LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIFDPRQGLPYLEESMVFFRAGDIVQFRPIE 244 Query: 244 RAAYDAAVADVDAGRFAPVIRDVSFSLTEFNRDIDGYNRKLDGVLH 289 R Y+ A+V++G F IR VSF L F D G + L VLH Sbjct: 245 RTEYEHMAAEVESGTFDLRIRPVSFDLDAFLADPRGCTQHLQEVLH 290 >FN0437 [E] COG2049 Allophanate hydrolase subunit 1 Fnu Fusobacterium nucleatum Length = 262 Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 28/266 (10%) Query: 2 QTRFSFGGDEHIFAEVGEAMSLEAFFKSLFITNAVRDARIKGVTEICPANASYQVKFDPD 61 +F F GD + E G +S++ K + + ++ I G+ E+ P S V +D Sbjct: 17 SVKFLFSGDSALVIEFGNEISVDINKKIRKMMDNIKKENIDGIIELVPTYCSLLVNYDVL 76 Query: 62 RIKPDDLLAELKRLDSASEKSEPVIKTRIIEIPVLYNDPWTHETLMRFRERHQNPDGTDL 121 ++ L+ +LK L + ++ + +IEIP LYND G DL Sbjct: 77 KVDYQSLVEKLKTLLNDDNETVEDEEVTLIEIPTLYNDEC----------------GPDL 120 Query: 122 EYAARINGLDSVDAFIKAHSSAPWFVSMVGFVAGLPFLYQMVERKRQLQAPKYLRPRTDT 181 Y A N L S + +K H+ + V M+GF+ G +L M E+ + P+ PR Sbjct: 121 SYVAEYNKL-SKEEVVKIHTGTDYLVYMLGFMPGFTYLGGMSEK---IATPRLESPRLQI 176 Query: 182 PKLTVGHGGCFSCIYSVRGAGGYQMFGITPMPIYDPN-QTISYLRDFMCLFKPGDIVKWK 240 +VG G + +Y GG+++ G TP+ +Y+P+ +T Y+ GD +++ Sbjct: 177 YPGSVGIAGKQTGMYPSMSPGGWRIIGRTPLKLYNPDSETPVYISS-------GDYIRYV 229 Query: 241 PIDRAAYDAAVADVDAGRFAPVIRDV 266 I Y+ + V+ + IR V Sbjct: 230 SISEEEYNNILKKVENNEYKLNIRKV 255 >CC1829_3 Non COG Length = 338 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/275 (27%), Positives = 129/275 (46%), Gaps = 11/275 (4%) Query: 9 GDEHIFAEVGE-AMSLEAFFKSLFITNAVRDARIKGVTEICPANASYQVKFDPDRIKP-- 65 GD+H+ E G + LE + + ++ ++GV ++ P S QV +D R+ Sbjct: 7 GDQHLLVEYGPIVLDLELRLRIHALLLDLQAQALEGVIDLTPGIRSLQVHYDSRRLSQAR 66 Query: 66 --DDLLAELKRLDSASEKSEPVIKTRIIEIPVLYNDPWTHETLMRFRE--RHQNPDGTD- 120 D L+A RL + P +R++ +P+ + DP ++T+ ++ + R P D Sbjct: 67 LLDILVAAEDRLGGLDDFEIP---SRVVHLPLSWKDPAIYQTIDKYMQAVRDDAPWCPDN 123 Query: 121 LEYAARINGLDSVDAFIKAHSSAPWFVSMVGFVAGLPFLYQMVERKRQLQAPKYLRPRTD 180 +E+ R+NGL+ +D K A + V +G V + V+ + +L KY RT Sbjct: 124 IEFIRRVNGLNGIDDVQKIVFDARYLVMGLGDVYLGAPVATPVDPRHRLVTTKYNPARTW 183 Query: 181 TPKLTVGHGGCFSCIYSVRGAGGYQMFGITPMPIYDPNQTISYLRDFMCLFKPGDIVKWK 240 TP VG GG + CIY + G GGYQ+FG T QT ++ L + D +++ Sbjct: 184 TPPNVVGIGGAYMCIYGMEGPGGYQLFGRTIQVWNTWRQTDAFTDGKPWLLRFFDQIRFF 243 Query: 241 PIDRAAYDAAVADVDAGRFAPVIRDVSFSLTEFNR 275 P+ D GR A I + +F L+++ R Sbjct: 244 PVSAEELVEWRRDFPLGRRAIRIEEETFRLSDYRR 278 >PAB1713 [E] COG2049 Allophanate hydrolase subunit 1 Pab Pyrococcus abyssi Length = 225 Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 29/239 (12%) Query: 9 GDEHIFAEVGEAMSLEAFFKSLFITNAVRDARIKGVTEICPANASYQVKFDPDRIKPDDL 68 GD + G+ +S E + + A+ + + E+ PA +S V +DP + +++ Sbjct: 7 GDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLKASYEEV 66 Query: 69 LAELKRLDSASEKSEPVIKTRIIEIPVLYNDPWTHETLMRFRERHQNPDGTDLEYAARIN 128 + ++R+ + + IK + +EIPV Y + G D+E+ A N Sbjct: 67 ESYVRRISTQEVEK---IKGKTVEIPVAYGGEF----------------GPDIEFVAEYN 107 Query: 129 GLDSVDAFIKAHSSAPWFVSMVGFVAGLPFLYQMVERKRQLQAPKYLRPRTDTPKLTVGH 188 GL SVD I+ HS + V +GF+ G +L M ER + P+ +PR P +VG Sbjct: 108 GL-SVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDER---IATPRLEKPRVKVPAGSVGI 163 Query: 189 GGCFSCIYSVRGAGGYQMFGITPMPIYDPNQTISYLRDFMCLFKPGDIVKWKPIDRAAY 247 G + Y++ GG+++ G TP+ ++P + + PGD VK+ PID + Sbjct: 164 AGKQTGWYAIESPGGWRIIGRTPLRTFNPGKVPP------SIVLPGDYVKFVPIDEMEF 216 >PH0987 [E] COG2049 Allophanate hydrolase subunit 1 Pho Pyrococcus horikoshii Length = 225 Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 29/239 (12%) Query: 9 GDEHIFAEVGEAMSLEAFFKSLFITNAVRDARIKGVTEICPANASYQVKFDPDRIKPDDL 68 GD G+ +S E + + A+ + + E+ PA +S V +DP + +++ Sbjct: 7 GDSAFLISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKASYEEV 66 Query: 69 LAELKRLDSASEKSEPVIKTRIIEIPVLYNDPWTHETLMRFRERHQNPDGTDLEYAARIN 128 + LKR+ SA E IK + IEIPV Y + G D+E+ A+ N Sbjct: 67 ESYLKRI-SAREVER--IKGKTIEIPVAYGGEF----------------GPDIEFVAQYN 107 Query: 129 GLDSVDAFIKAHSSAPWFVSMVGFVAGLPFLYQMVERKRQLQAPKYLRPRTDTPKLTVGH 188 GL SVD I+ HS + V +GF+ G +L M ER + P+ +PR P +VG Sbjct: 108 GL-SVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDER---IATPRLEKPRLKVPAGSVGI 163 Query: 189 GGCFSCIYSVRGAGGYQMFGITPMPIYDPNQTISYLRDFMCLFKPGDIVKWKPIDRAAY 247 G + Y++ GG+++ G P+ ++P + + PGD VK+ PID + Sbjct: 164 AGKQTGWYAIESPGGWRIIGRIPLRTFNPGKVPP------SIVLPGDYVKFVPIDEKEF 216