BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0059.0057.p (325 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0496 [E] COG1984 Allophanate hydrolase subunit 2 Pae Pseudomon... 367 e-101 BH1818 [E] COG1984 Allophanate hydrolase subunit 2 Bha Bacillus ... 216 4e-56 FN0436 [E] COG1984 Allophanate hydrolase subunit 2 Fnu Fusobacte... 213 4e-55 ECs0737 [E] COG1984 Allophanate hydrolase subunit 2 Ecs Escheric... 188 2e-47 ZybgK [E] COG1984 Allophanate hydrolase subunit 2 EcZ Escherichi... 187 2e-47 >PA0496 [E] COG1984 Allophanate hydrolase subunit 2 Pae Pseudomonas aeruginosa Length = 325 Score = 367 bits (943), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/321 (57%), Positives = 232/321 (72%), Gaps = 1/321 (0%) Query: 1 MAVRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMG 60 M+++VLKPGLAT+VQD GR G+YH+GIP SG +D++AL AANLLVGN AAVLE +G Sbjct: 1 MSIKVLKPGLATSVQDAGREGHYHLGIPPSGALDQYALRAANLLVGNAPTAAVLECALLG 60 Query: 61 PELEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGI 120 P+LEF DA VAV GA + P+L+G TSF+V+ GQ+L FDF++ GARGY+A+ GGI Sbjct: 61 PQLEFQRDALVAVCGARMTPRLEGAEMPLDTSFRVRAGQVLGFDFIRAGARGYLAIDGGI 120 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 VP VLGSRSTY LGA+GG +GR+L GD LP+G AS + +G + L+ G Sbjct: 121 AVPEVLGSRSTYGLGAIGGLQGRRLAEGDLLPLGPASPSAVEGLALPRSLQVEVGG-EVS 179 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 LR +PGLY HR+T A FF++TW V EADR GYRFKGG L F PRE PFGAGSDPS Sbjct: 180 LRVVPGLYVHRLTPDAVERFFAETWTVGSEADRTGYRFKGGTALRFEPREQPFGAGSDPS 239 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 NI DACYP GSIQVPGG EPIVLHRDAVSGGGY +GTVI+ D++ + Q+QPN +FV Sbjct: 240 NIVDACYPIGSIQVPGGLEPIVLHRDAVSGGGYATLGTVISPDLNRLAQMQPNQKGRFVA 299 Query: 301 VDMNQALAARKSRTELLGKLR 321 V + + L AR+ + +L+ Sbjct: 300 VSLEEGLEARRRYNWQVQRLQ 320 >BH1818 [E] COG1984 Allophanate hydrolase subunit 2 Bha Bacillus halodurans Length = 331 Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 127/338 (37%), Positives = 186/338 (55%), Gaps = 32/338 (9%) Query: 5 VLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMGPELE 64 + +PGL TT+QDLGR GY G+ +SG MD +A ANLLVGND AA+LE F+GP ++ Sbjct: 3 IFRPGLLTTIQDLGRTGYLKYGVIVSGPMDEYAHRMANLLVGNDEKAALLEMTFIGPTIQ 62 Query: 65 FTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGIDVPV 124 FT D +A+TG +L P +DG + VK+G +LSF K G R Y+A+ GGIDVP Sbjct: 63 FTSDQLIAMTGGDLSPTIDGHSVPMYRPVFVKKGAVLSFGRCKTGCRSYLAIGGGIDVPK 122 Query: 125 VLGSRSTYALGALGGFKGRKLEAGDELPVG------------------HASVTVKDGRTV 166 V+ SRSTY +GGF+GR L GDEL G H+ T K +V Sbjct: 123 VMNSRSTYLRAKIGGFQGRALVEGDELICGAPPEQTERLVKTCQKGIVHSFATTK--WSV 180 Query: 167 ASDLRGHPAGMPTELRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEF 226 S R G +R G ++ + +EA+ + FFS+T++V ++DR+GYR K G LE Sbjct: 181 VSSQRSRD-GAEKVVRVTVGSHYEQFSEASQHKFFSETFQVTSKSDRMGYRLK-GPTLER 238 Query: 227 VPREPPFGAGSDPSNITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDL 286 + + S+P ++ G+IQVP PI+L D + GGY + VIA D+ + Sbjct: 239 LEEQELI---SEPISV-------GTIQVPADGNPIILMADRQTTGGYPRIAHVIAVDLPI 288 Query: 287 IGQLQPNTPVKFVKVDMNQALAARKSRTELLGKLRSAM 324 I Q +P ++F + + +A R +L++++ Sbjct: 289 IAQAKPGAAIRFQQASLKEAERLYIRRAREFNELKTSI 326 >FN0436 [E] COG1984 Allophanate hydrolase subunit 2 Fnu Fusobacterium nucleatum Length = 336 Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 115/323 (35%), Positives = 176/323 (54%), Gaps = 13/323 (4%) Query: 3 VRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMGPE 62 ++V KPGL TTVQD+GR GY GIP+SG MD A AN LV +D VLE F+GP Sbjct: 4 IKVHKPGLCTTVQDIGRIGYQQFGIPVSGVMDEFAFTVANYLVESDKNNTVLEIPFLGPT 63 Query: 63 LEFTEDATVAVTGAELPPKLDGEPRETWTSFKVKRGQILSFDFLKRGARGYIAVAGGIDV 122 LEF D T+A+TGA++ PK++ + + W S +K+G LSF LK G R Y+A + IDV Sbjct: 64 LEFDFDVTIAITGADIQPKINNQEVKMWQSINIKKGDTLSFGGLKTGIRSYLAFSAEIDV 123 Query: 123 PVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTELR 182 P+++GS+ST LGGF GR+L+ GD + +V V + + +R Sbjct: 124 PIIMGSKSTLLKSKLGGFDGRQLKIGD--IINFKNVKVLSKKNILDKKYIPEYKHNQNIR 181 Query: 183 AMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPSNI 242 + G + E + + ++V +ADR+G R G E + + D ++I Sbjct: 182 IVLGPQDNYFDENSIKTLLENKYQVTKDADRMGMRLLG----EVIKHK-------DKADI 230 Query: 243 TDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVKVD 302 +GSIQVPG +PI+L D + GGY + TVI AD+ + Q+ PN ++F ++ Sbjct: 231 ISDAAVFGSIQVPGNGQPIILLADRQTTGGYTKIATVIKADLPKLAQMVPNDTIEFSLIN 290 Query: 303 MNQALAARKSRTELLGKLRSAMA 325 + +A K ++L +++ + Sbjct: 291 IEEAQKEYKEFYKILDEIKESFV 313 >ECs0737 [E] COG1984 Allophanate hydrolase subunit 2 Ecs Escherichia coli O157:H7 Length = 310 Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/320 (35%), Positives = 173/320 (54%), Gaps = 21/320 (6%) Query: 3 VRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMGPE 62 +++++ G+ TTVQD GR G+ GI G +D AL ANLLVGNDA A LE Sbjct: 2 LKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQLT 61 Query: 63 LEFTEDATVAVTGAELPPKLDGEPRETWTSFKV--KRGQILSFDFLKRGARGYIAVAGGI 120 +EF D A+TGA +LD WT +++ K GQ L+ + G R Y+AVAGGI Sbjct: 62 VEFETDGWFALTGAGCEARLDDNA--VWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGI 119 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 DVP V+GS ST +GG +GR L+ GD LP+G A + + V L G+ Sbjct: 120 DVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFMEAQGVKQLLWGN------R 173 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 +RA+PG +H A+ + F+ W+++ +++R+GYR +G + + R +D Sbjct: 174 IRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQG----QILKRT------TDRE 223 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 ++ P G +QVP +PIVL DA + GGY + +I ADM + Q+ P+ FV+ Sbjct: 224 LLSHGLLP-GVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQ 282 Query: 301 VDMNQALAARKSRTELLGKL 320 + +AL AR+ + +L Sbjct: 283 CSLEEALKARQDQQRYFEQL 302 >ZybgK [E] COG1984 Allophanate hydrolase subunit 2 EcZ Escherichia coli O157:H7 EDL933 Length = 310 Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/320 (35%), Positives = 173/320 (54%), Gaps = 21/320 (6%) Query: 3 VRVLKPGLATTVQDLGRPGYYHIGIPLSGGMDRHALVAANLLVGNDAGAAVLEAVFMGPE 62 +++++ G+ TTVQD GR G+ GI G +D AL ANLLVGNDA A LE Sbjct: 2 LKIIRAGMYTTVQDGGRHGFRQSGIXHCGALDMPALRIANLLVGNDANAPALEITLGQLT 61 Query: 63 LEFTEDATVAVTGAELPPKLDGEPRETWTSFKV--KRGQILSFDFLKRGARGYIAVAGGI 120 +EF D A+TGA +LD WT +++ K GQ L+ + G R Y+AVAGGI Sbjct: 62 VEFETDGWFALTGAGCEARLDDNA--VWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGI 119 Query: 121 DVPVVLGSRSTYALGALGGFKGRKLEAGDELPVGHASVTVKDGRTVASDLRGHPAGMPTE 180 DVP V+GS ST +GG +GR L+ GD LP+G A + + V L G+ Sbjct: 120 DVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKAKRDFMEAQGVKQLLWGN------R 173 Query: 181 LRAMPGLYWHRITEAAGNGFFSDTWKVAPEADRIGYRFKGGKPLEFVPREPPFGAGSDPS 240 +RA+PG +H A+ + F+ W+++ +++R+GYR +G + + R +D Sbjct: 174 IRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQG----QILKRT------TDRE 223 Query: 241 NITDACYPYGSIQVPGGTEPIVLHRDAVSGGGYFMVGTVIAADMDLIGQLQPNTPVKFVK 300 ++ P G +QVP +PIVL DA + GGY + +I ADM + Q+ P+ FV+ Sbjct: 224 LLSHGLLP-GVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQ 282 Query: 301 VDMNQALAARKSRTELLGKL 320 + +AL AR+ + +L Sbjct: 283 CSLEEALKARQDQQRYFEQL 302